Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0493 ATGCTATCCAGAGAGCGATCCACCAAGGTCTTCCGCTTGGCACTCAATTTCTCAAGTCTTCTTCACGCTCATGGTTCCTCCACTGGCCAATCACTGCCCATTACCAAACAAGCCTTGACAACCCTCCTGCAATCATGTTCTTCACACCCAAGCCTCCTCAAACAACTCCATGCTCTCCTCCTCACAACAGGCCTTTCCATCAAGAACGCCCTCATCACCCAGCTTCTTACCTCCCTGACTCTCTTAGGGGATATGTCATACGCTCGTCAACTGTTCGACGAAATGCACAAGCCAAGGCCCTTTTTGTGGAACACCATCATGAAAGGGTACGTGAAAAATGGCATTCCCGATAAGGCAGTCTCGGTTTACGGGAAAATGCGTCATCTTGGTGTTCGTCCCGACCCCTTTACGTTTCCTTTTGTGATCAAGGCCTGTGCTGAACTGGCTGAATTGTGGGCAGGTTTGGGTATGCATGGCCATGTTGTGAAACATGGATTGGAGTTTGTTGCTGCTGTGAGGACTGAATTGATGATAATGTATGTTAAATTCGGGGAGTTGGGTTGTGCTGAGTTCTTGTTTGGGAGTATGGTTGAGAGAGATTTGGTAGCTTGGAATGCTTTGATTGCTGTGTGCGTGCAAACTGGATTTTCCAGCAAGGCTCTCCAGTCGTTTCGGGAAATGGGCATGGCCGGAATAAAGCCTGATTCTGTAACTATTGTGAGTGCTCTTTCGGCTTGTGGTCATTTGGGGTGTTTAGAAACTGGTGAGGAGATTTATGAGTTTGCTAGAGAAGAAGGGATTGATAGCAATATAATTGTTCATAATGCAAGGCTTGACATGTGCGCAAAATGTGGGGACATGGATAAGGCCATGAATCTATTTGATGAGATGCCTCAAAGGAATGTAATTTCTTGGAGCACTGTGATTGGAGGGTACGCAGTTAATGGGGAGAGTGAGAAAGCATTGGCTTTGTTCTCTAGGATGAAGAATCAAGGAGTACAACCAAACTATGTCACCTTTCTTGCCGTTCTATCTGCTTGCAGTCACACTGGACGAGTGAATGAAGGGTGGCAATATTTTAATTTCATGGCTCAATCAGATGATAAAAATATCCAACCTAGAAAAGAGCACTATGCTTGCATGGTTGATCTTCTTGGCCGGTCAGGACATCTTGAAGAGGCTTATAACTTCATTAAAATTATGCCCATTGAGGCAGACCCAGGAATTTGGGGTGCTTTATTGGGGGCCTGTGCTATTCATCAGAATATCAAATTGGGTCAGCATGTGGCTGATTTACTCTTTGAATTAGCTCCTGAGATCGCCTCATATCATGTTTTATTGTCCAACATGTATGCTGCAGCTGGTAGGTGGCATTGTGTTGAGAAGGTGAGGCAGAGAATGAAAAAGAAAGGGGCAAGAAAAGTAGCTGCTTACAGCTCAGTCGAATTTAATGGTGAAATTCATATCTTATATGGGGGAGACAAGTCACACCCACAGTCAGCAAGTATATTGGCGAAATTAGAGGATTTACTTAAACAGATGAAGAGTATGGGTTACATTCCAGAGACTGATTCTGTATTCCATGATGTGGAGGATGAGGAAAAGGAATCCACACTCAGCACTCACAGTGAAAAGCTTGCCATTGCATTTAGTCTTATCAATGGAAGTCCCAAGTTCCCCATTAGAGTAATGAAAAATTTGAGAATTTGTGGTGATTGTCATACTTTCTGCAAACTTGTTTCCAGAATTACAATGAGAGAGATCATCATGAGAGATAAGAACCGATTTCATCATTTTAAAAATGGCATTTGTTCATGCAAGGATTTCTGGTGA 1833 0.4364 MLSRERSTKVFRLALNFSSLLHAHGSSTGQSLPITKQALTTLLQSCSSHPSLLKQLHALLLTTGLSIKNALITQLLTSLTLLGDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0493 610 Pfam E+ motif 492 514 IPR046849 -
Vvi1g0493 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Vvi1g0493 610 FunFam Pentatricopeptide (PPR) repeat-containing protein 366 529 - -
Vvi1g0493 610 Gene3D Tetratricopeptide repeat domain 252 366 IPR011990 GO:0005515
Vvi1g0493 610 Gene3D Tetratricopeptide repeat domain 367 488 IPR011990 GO:0005515
Vvi1g0493 610 Pfam DYW family of nucleic acid deaminases 518 610 IPR032867 GO:0008270
Vvi1g0493 610 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 199 547 IPR046960 GO:0003723|GO:0009451
Vvi1g0493 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Vvi1g0493 610 FunFam Uncharacterized protein 15 155 - -
Vvi1g0493 610 FunFam Pentatricopeptide repeat-containing protein mitochondrial 255 364 - -
Vvi1g0493 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Vvi1g0493 610 Gene3D Tetratricopeptide repeat domain 15 155 IPR011990 GO:0005515
Vvi1g0493 610 Pfam PPR repeat 378 401 IPR002885 -
Vvi1g0493 610 Gene3D Tetratricopeptide repeat domain 156 251 IPR011990 GO:0005515
Vvi1g0493 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 300 IPR002885 -
Vvi1g0493 610 Pfam PPR repeat family 101 146 IPR002885 -
Vvi1g0493 610 Pfam PPR repeat family 200 246 IPR002885 -
Vvi1g0493 610 Pfam PPR repeat family 300 348 IPR002885 -
Vvi1g0493 610 FunFam Uncharacterized protein 156 254 - -
Vvi1g0493 610 Pfam E motif 420 481 IPR046848 -
Vvi1g0493 610 NCBIfam pentatricopeptide repeat 102 134 IPR002885 -
Vvi1g0493 610 NCBIfam pentatricopeptide repeat 202 236 IPR002885 -
Vvi1g0493 610 NCBIfam pentatricopeptide repeat 273 301 IPR002885 -
Vvi1g0493 610 NCBIfam pentatricopeptide repeat 303 336 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0493 Vvi-Chr1 4708370 4710202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0493 36 610 Glycoside Hydrolase AT3G49170 38.055 7.43e-136 416