Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0486 ATGGAGCCAAATGCGAGCAATTTGCACTCTCACTGCGTGGAGATAACCATGGAGGTGCATAAGGTAGTTCCACCACCCCATAGGAGCACCTTTCAGAAGTTCAAGACCAGGCTCAAGGAAACCTTCTTCCCGGATGACCCTTTGCGCCAATTCAAGGGACAGCCACCCAAGAGGAAGTGGATACTTGGAGCTCAGTATGTTTTTCCTATCCTTCAATGGGGTCCCAACTACAGTCTCAAACTCTTCAAATCTGACATCGTTTCTGGCCTCACCATTGCCAGCTTAGCCATTCCTCAGGGAATCAGCTATGCTAAGCTTGCTAATCTACCTCCCATAGTTGGCCTCTATTCAAGCTTTGTTCCTCCTCTTGTATATGCGGCTCTAGGAAGCTCGAGGGATCTCGCGGTGGGTCCGGTTTCTATTGCTTCTCTGATACTGGGATCAATGCTTAGGCAGGAAGTCTCTCCATCCAAAGACCCAATCTTGTTTCTTCAACTAGCCTTTTCTTCAACCTTTTTTGCTGGTGTTGTTCAAGCTTCCCTTGGAATATTAAGACTTGGATTTATTATTGATTTCCTTTCAAAGGCTACTCTTATTGGATTCATGGCTGGAGCTGCTATTATAGTCTCTCTGCAACAGCTGAAAGCCCTCCTTGGCATTACGCATTTCACCAAACAAATGGGTTTGGTTCCTGTTCTGGGCTCTGTGTTCCACAACACAGCTGAGTGGTCATGGCAAACAATAGTGATGGGGTTCTGCTTCCTATCGCTGCTTCTGCTGGCAAGACACGTTAGCATGAAGAAACCAAATCTGTTCTGGGTCTCAGCCGGAGCTCCTCTTGCTTCTGTCATCATCTCGACCCTATTGGTTTTCGCATTCAAAGCTCAACATCATGGCATCAGCATAATTGGAAAATTACAAGAAGGTTTAAACCCTCCCTCGTGGAACATGTTGCATTTCCATGGAAGCTACCTGGGACTAGTAATGAAAACTGGCCTTGTCACTGGCATTATTTCCCTTACTGAAGGTATTGCAGTGGGAAGGACTTTTGCTGCTCTGAAGGGCTACAAAGTGGATGGGAACAAGGAAATGATGGCGATTGGGCTGATGAACATTGTTGGCTCCTCTACTTCCTGCTACGTCACAACAGGTGCTTTCTCTCGGTCTGCTGTGAATCACAATGCAGGAGCCAAAACTGCAGCCTCTAATATAATAATGGCGGTGACTGTCATGGTGACTCTCCTCTTCCTCATGCCTCTGTTCCAATACACACCAAACGTAGTGCTGGGCGCGATCATAGTCACAGCGGTGGTGGGCCTCATTGACCTCCCGGCTGCTTATCAAATTTGGAAGATTGATAAATTCGATTTCATTGTGCTGTTATGTGCATTCTTGGGTGTCATCTTTATCTCTGTCCAACAGGGTCTTGCCATTGCAGTAGGAATTTCCATTTTCAAGGTCCTCCTGCAAGTCACTAGGCCAAGAACAGGGATGTTAGGGAATATACCAGGGACAGATATATATCGCAATATTCATCATTACAAGGATGGTATGAAAGTTCCAGGCTTCCTCATTTTAAGCATTGACGCTTCAATCAACTTCGCAAACACCACTTACCTCAATGAAAGGATTTTGAGATGGGTAGAAGAATATGAAGCACAAGATGCAGAAGAGGAGGGGAAAAAGCACTCATCCCTCCAATTTGTGATCCTAGACCTGTCAGCTGTGAGCACCATAGACACCAGCGGAGTCTCAATCTTTAGCGACTTGAAGAAGGCACTGGAAAAGAAGGGCCTTGAGATGGCGTTGGTGAACCCGGTGGGTGAAGTGATGGAAAAACTGCAGCGGTGGGATGAAGGCCGTGACATTCTGAGACCAGATAGTGTTTACTTGACGGTCGGTGAGGCTGTAGCTTCCCTCTCGTCCGCCGTCAAGTGTCAACCATCAAACCGGGCATAG 1959 0.4686 MEPNASNLHSHCVEITMEVHKVVPPPHRSTFQKFKTRLKETFFPDDPLRQFKGQPPKRKWILGAQYVFPILQWGPNYSLKLFKSDIVSGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAALGSSRDLAVGPVSIASLILGSMLRQEVSPSKDPILFLQLAFSSTFFAGVVQASLGILRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKALLGITHFTKQMGLVPVLGSVFHNTAEWSWQTIVMGFCFLSLLLLARHVSMKKPNLFWVSAGAPLASVIISTLLVFAFKAQHHGISIIGKLQEGLNPPSWNMLHFHGSYLGLVMKTGLVTGIISLTEGIAVGRTFAALKGYKVDGNKEMMAIGLMNIVGSSTSCYVTTGAFSRSAVNHNAGAKTAASNIIMAVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVVGLIDLPAAYQIWKIDKFDFIVLLCAFLGVIFISVQQGLAIAVGISIFKVLLQVTRPRTGMLGNIPGTDIYRNIHHYKDGMKVPGFLILSIDASINFANTTYLNERILRWVEEYEAQDAEEEGKKHSSLQFVILDLSAVSTIDTSGVSIFSDLKKALEKKGLEMALVNPVGEVMEKLQRWDEGRDILRPDSVYLTVGEAVASLSSAVKCQPSNRA* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0486 652 NCBIfam sulfate permease 69 617 IPR001902 GO:0016020|GO:0055085
Vvi1g0486 652 Pfam STAS domain 519 636 IPR002645 -
Vvi1g0486 652 Gene3D STAS domain 493 643 IPR036513 -
Vvi1g0486 652 SUPERFAMILY SpoIIaa-like 519 640 IPR036513 -
Vvi1g0486 652 CDD STAS_SulP_like_sulfate_transporter 514 623 - -
Vvi1g0486 652 ProSiteProfiles STAS domain profile. 513 640 IPR002645 -
Vvi1g0486 652 Pfam Sulfate permease family 82 461 IPR011547 GO:0016020
Vvi1g0486 652 FunFam Sulfate transporter 31 493 643 - -
Vvi1g0486 652 ProSitePatterns SLC26A transporters signature. 111 132 IPR018045 GO:0008271|GO:0008272
Vvi1g0486 652 PANTHER SULFATE TRANSPORTER 28 640 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0486 Vvi-Chr1 4650831 4654688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0486 1 648 Inorganic Solute Cotransporters AT3G15990 64.000 0.0 851