Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0484 ATGGATGATGAAGTGGTGCAGAGAGCCTTCCAAGAAGGAGGTCGAGACTACTACCAACAGCAGCCATCCACTTCTTCGTCATCCTCTTCCATTCTCCAATCCCTCCCTCTCCATGTGTCTTTTGATCATGGGTATTATTTATTGGTAAAATCCATTCAAGAACTTCGGGAGAAGAAAGATGGTCTCGTGACGGTTGGCATTGGCGGCCCCAGTGGTTCTGGTAAATCAAGCTTAGCAGAGAAGGTAGCATCTGTCATTGGCTGTACTGTTGTATCCATGGAGAACTATCGTGATGGAGTGGATGATGGAAATGATTTGAATTCCATAGATTTTGATGCACTGGTTTCAAATCTTGAGGATTTGATAAGAGGTAAAGATACATTGATCCCAGTGTTTGATTTCCAAGAAAAGAGACGTGTTGATTCAAGAGCCATAAAGAGTGCTTCATCTGGTGTGGTAATAGTTGATGGTACTTACGCTCTACATTCAAGATTGCGATCTTTGCTTGATATTCGGGTTGCAGTGGTTGGTGGTGTTCATTTTAGCCTTCTTTCCAAAGTTCGATATGATATTGGAGATTCTTGTTCTTTGGACTACCTTATTGACAGCATTTTCCCATTATTCAGAAAGCATATTGAGCCAGACCTTCATCATGCTCAGATTAGAATAAATAACAGCTTTGTCTCATCATTTAGAGAAGCAATCTACAAGCTGAAATGCAAAAGTGAGACGCCAAATGGACATTCTGCTTACTCTTTTCACGGAAATGAAGCACAAACAGATAATTTTATAGAGATGTACCTTAGGCCTCCATCAGCAAATGAAGAAGCACGGATAAATGATTGGATTAAAGTGCGGCAATCTGGTATCAGATATTATTTATCACTGGGTGACCAGAGGATCGTTGACAAAAATTACATCATTAGGCCAAAAGCTGAGTTTGAGGTTGGGCGGATGACACTGGGCGGGTTGCTAGCTTTGGGCTACACTGTTGTAGTGAGTTATAAACGGGCATCTACATCAGTCAGTAATGGACATCTTTCCATGTCATTTGAAACTATTGATAGTCTTGGTGAAACATTCATGGTGCTCAGGGGCACAGATAGGAAAACAGTTGGTGCAGAGGTGTTGAGGATGGGTGTCAATGGACCATGGATCACTAAATCGTATCTAGAGTTGATTCTTGAGAGAAAGGGTGTACCACGTCTTAATACACCACCACTCTTGTCCAGTATATCTCCTACCAGTAATCAAGAAAAGGTGGTTGTTGCACCAAAGCCGATTCGTATCACACCAAACCTTGTTACTCGGCTTGAAGATCTATCTCAGCCATGGACGAGGTCCCCAACCAAATCCAAAATGGAACCTGTGCTGGCAACATGGCATTTCATATCACCAGATCCTCTGCATGCTGATAGTTCTGTCACAGATCCTTCATCTTTCAGGGATACCCTGCGTCTTGCTCCAATGCCTGATTCTTATGACTTGGATAGAGGATTGCTTCTCTCCGTTCAAGCAATACAGGCTCTGTTGGAGAATAAAGGTCTTCCGGTCATAGTTGGAATCGGAGGTCCAAGTGGATCTGGAAAAACTAGTTTGGCTCATAAAATGGCAAATATTGTTGGCTGTGAAGTAGTTTCCCTTGAAAGCTATTATAAATCTGAACATGTAAAGGACTTTAAGTGCGATGATTTTAGTTCTCTTGATCTGTCTTTGCTTTCAAAGAATATTGATGATGTAAAAAACTGCCGAAGAACAAAAGTTCCTATATTTGACTTGGAGACTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGGTGATTTTTGAAGGGGTTTATGCTTTGCATCCTGAGATCCGAAAATCACTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATCTAATTTCTCGTGTTCAAAGGGATAAAAGCAGGGCAAGAAGCTTTATGTCCCAAAATGAAATCATGATGACGGTTTTTCCAATGTTTCAGCAGCACATTGAACCACATCTTGTTCATGCACATGTTAGTAGAAATGGAGTCATCCAACAATTTTAG 2082 0.4155 MDDEVVQRAFQEGGRDYYQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKSSLAEKVASVIGCTVVSMENYRDGVDDGNDLNSIDFDALVSNLEDLIRGKDTLIPVFDFQEKRRVDSRAIKSASSGVVIVDGTYALHSRLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCKSETPNGHSAYSFHGNEAQTDNFIEMYLRPPSANEEARINDWIKVRQSGIRYYLSLGDQRIVDKNYIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTSVSNGHLSMSFETIDSLGETFMVLRGTDRKTVGAEVLRMGVNGPWITKSYLELILERKGVPRLNTPPLLSSISPTSNQEKVVVAPKPIRITPNLVTRLEDLSQPWTRSPTKSKMEPVLATWHFISPDPLHADSSVTDPSSFRDTLRLAPMPDSYDLDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYYKSEHVKDFKCDDFSSLDLSLLSKNIDDVKNCRRTKVPIFDLETGARSGFKELEVSEDCGVVIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRARSFMSQNEIMMTVFPMFQQHIEPHLVHAHVSRNGVIQQF* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0484 693 SMART AAA_5 61 211 IPR003593 GO:0016887
Vvi1g0484 693 SMART AAA_5 516 662 IPR003593 GO:0016887
Vvi1g0484 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 176 IPR027417 -
Vvi1g0484 693 PRINTS Uridine kinase signature 640 650 - -
Vvi1g0484 693 PRINTS Uridine kinase signature 517 534 - -
Vvi1g0484 693 PRINTS Uridine kinase signature 544 555 - -
Vvi1g0484 693 PANTHER URIDINE KINASE 11 280 - -
Vvi1g0484 693 CDD UMPK_like 519 683 - -
Vvi1g0484 693 CDD UMPK_like 78 226 - -
Vvi1g0484 693 Pfam Phosphoribulokinase / Uridine kinase family 519 684 IPR006083 GO:0005524|GO:0016301
Vvi1g0484 693 Pfam Phosphoribulokinase / Uridine kinase family 105 224 IPR006083 GO:0005524|GO:0016301
Vvi1g0484 693 Gene3D - 63 243 IPR027417 -
Vvi1g0484 693 Gene3D - 516 692 IPR027417 -
Vvi1g0484 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 679 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0484 Vvi-Chr1 4612464 4628112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0484 517 650 PRT Gene Family AT3G27190 25.342 3.75e-08 54.7