Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0483 ATGGAGGGACTCCCTTCCGGTTACCGGCCGAATGTTGGAGTTTGCCTCATCAACTCCGACGATCAGGTTTTTGTGGCTTCCAGATTGAATGTTCCAGGTGCATGGCAGATGCCTCAGGGGGGTATTGAAGATGGTGAAGAACCCAAGTCTGCGGCCATGAGGGAATTGAGAGAAGAAACTGGAATAGTGTCTGCCGAAATTATTGCTGAGGTCCCAAATTGGTTGACGTATGACTTCCCTCCTGCTGTGAAGGCCAAAGTCAATCGCCTGTGGCGAGGTGAATGGCATGGTCAGGCGCAGAAGTGGTTCCTTATGAGATTAACAAAAGACGACAGTGAAGTCAACTTAGCAAGTGGTGAAGCAGAACCAGAATTCTCAGAGTGGAAATGGTCAAACCCTGAAGAAGTTATTGAGCAGGCAGTGGACTACAAGAGGCCGACATATGAGGAAGTGATGAAAACCTTCAGACCTTACTTCAGTGGGAATGCAAACTCTGCCAAATGTAGATCAGCAAAATGGTGA 522 0.4808 MEGLPSGYRPNVGVCLINSDDQVFVASRLNVPGAWQMPQGGIEDGEEPKSAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKAKVNRLWRGEWHGQAQKWFLMRLTKDDSEVNLASGEAEPEFSEWKWSNPEEVIEQAVDYKRPTYEEVMKTFRPYFSGNANSAKCRSAKW* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0483 173 PRINTS NUDIX hydrolase family signature 35 49 IPR020476 -
Vvi1g0483 173 PRINTS NUDIX hydrolase family signature 49 64 IPR020476 -
Vvi1g0483 173 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 5 162 - -
Vvi1g0483 173 FunFam Nudix hydrolase 25 1 159 - -
Vvi1g0483 173 Hamap RNA pyrophosphohydrolase [rppH]. 2 160 IPR022927 -
Vvi1g0483 173 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 159 - -
Vvi1g0483 173 SUPERFAMILY Nudix 7 158 IPR015797 -
Vvi1g0483 173 Pfam NUDIX domain 8 150 IPR000086 -
Vvi1g0483 173 ProSitePatterns Nudix box signature. 40 61 IPR020084 GO:0016787
Vvi1g0483 173 CDD Ap4A_hydrolase_plant_like 7 155 IPR022927 -
Vvi1g0483 173 ProSiteProfiles Nudix hydrolase domain profile. 7 153 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0483 Vvi-Chr1 4586268 4590991 Dispersed