Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0482 ATGGACAAGTTGAAAAAAGCAGTATTGGGGGCAATGACCTTGGATTCAGCTACGCCATTGTCTGAGGAAACAAAGAAGTGCATCGAAAAGCGTCTTCTCCAGTTATTCCCCGTGATCCGAACCCCTGATCACCCTCCCTACGCTTGGATGATATTGGATGCGATTAAGACATTGAAAGAAAAAAGGGGTTCAAGTGAGAAATCTCTGTCAGAGTTCATTAAATCAAATTATGAAGTGCCTTGGGCTCATTCAAGTTATCTAAGTCACCATCTTTGTAAACTTGCTCAGAATGGTGACATTGTTGTTACATCTGATGATCATTATATGATTCCAACCGGAAACCCTAACCCTAAGCGGAAAGAAAAGCAGCAGAAGCGGAAGCGTCATCAGGGTAGGGGACGCCGTGGTATTTATGATAAGGAAGCAGTGGTTGAAAAAAAAAATCAACTAGGAGAACAAGAGAAAGTGGTGATTAAAGAATTGAGTCAAGCACAAAAACATGAAAATTATGTCATTGATGGAGCAAACGAACAGGATTATCAAGTGAATGAAGGAAAAAATCAATCACAAGGACAACAAAATGAGGTGAGATCCGAGTTACTGCAATCATCATGCCTCAATGATGATAATTGTGCTACTTTGATGGTCATACCTGTTGAATCCTCTAGCCCTAGGGTGGAAGATGAGGGGGAATCTGTAGAGGAGCTGCCAAAGCAACAAAATAGGAGGAAGAGCCCGTTTGATTCATTGCCCCCAGTCAATACTCAGCATCATTTTGAGGAGCAACAGCCACAATCTCAACACCAAGGCATAGCTTCTATACCAGAAGAGGATACAGATGCAGGGGCATTGCTGCCCATAGGTCCTCCTCAGCATACATTGTCCCAGCATCGAGGCCAAGGAAGGCCTCCTGAACCACAACCTGATACAATTACAAGAGATGAAGCATTGTTGCCTTTGCAGCATGAGTCTTATCAACAGCACCCACCACAGAATCGAGGGCGAGGGAGACCTCGTAAGCTAAAACGAGACGCAGAGATTACGGTTAGGGATTTTTCATCCTCTCAGAATCTACGACGAGGAAGACCTCGAAAGCCAAAACAAGATGCAGAGACTATGATGGGGGGTTTTTCAACCTCTCAGAATCTAAGACGATCTAAACGAAAGCCTCATTTTGACACAACGATGGAGAATCATTGTCCCCTCATAACTGTGCAGCAGCAACCAAAGCACATCCATATTGGGGAAGTCCTTCAAAACCTTGATTGA 1269 0.4381 MDKLKKAVLGAMTLDSATPLSEETKKCIEKRLLQLFPVIRTPDHPPYAWMILDAIKTLKEKRGSSEKSLSEFIKSNYEVPWAHSSYLSHHLCKLAQNGDIVVTSDDHYMIPTGNPNPKRKEKQQKRKRHQGRGRRGIYDKEAVVEKKNQLGEQEKVVIKELSQAQKHENYVIDGANEQDYQVNEGKNQSQGQQNEVRSELLQSSCLNDDNCATLMVIPVESSSPRVEDEGESVEELPKQQNRRKSPFDSLPPVNTQHHFEEQQPQSQHQGIASIPEEDTDAGALLPIGPPQHTLSQHRGQGRPPEPQPDTITRDEALLPLQHESYQQHPPQNRGRGRPRKLKRDAEITVRDFSSSQNLRRGRPRKPKQDAETMMGGFSTSQNLRRSKRKPHFDTTMENHCPLITVQQQPKHIHIGEVLQNLD* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0482 422 PANTHER HISTONE H1 22 351 - -
Vvi1g0482 422 MobiDBLite consensus disorder prediction 222 389 - -
Vvi1g0482 422 MobiDBLite consensus disorder prediction 224 242 - -
Vvi1g0482 422 MobiDBLite consensus disorder prediction 243 273 - -
Vvi1g0482 422 Gene3D - 40 130 IPR036388 -
Vvi1g0482 422 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g0482 422 Pfam linker histone H1 and H5 family 44 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g0482 422 MobiDBLite consensus disorder prediction 109 139 - -
Vvi1g0482 422 SUPERFAMILY "Winged helix" DNA-binding domain 40 123 IPR036390 -
Vvi1g0482 422 PRINTS AT-hook-like domain signature 297 307 IPR017956 GO:0003677
Vvi1g0482 422 PRINTS AT-hook-like domain signature 330 341 IPR017956 GO:0003677
Vvi1g0482 422 PRINTS AT-hook-like domain signature 355 365 IPR017956 GO:0003677
Vvi1g0482 422 FunFam HMG-Y-related protein A 39 121 - -
Vvi1g0482 422 SMART h15plus2 41 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vvi1g0482 422 CDD H15 41 101 IPR005818 GO:0000786|GO:0003677|GO:0006334