Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0481 ATGCTTGACAAAGAATTCTTCACAGAATATGGTGAGGCAACTCAATATGAAATCCAAGAGGTAGTTGGCAAAGGAAGCTATGGCGTTGTTGCATCTGCAGTTAATACTCACACTGGAGAGAGGGTAGCTATAAAGAAGATCAATGATGTTTTTGAAAATGTTTCCGATGCCACCCGCATTCTAAGAGAAATTAAGCTCCTTCGGCTGCTTAGGCATCCTGATATTGTACAAATAAAGCATATAATGCTTCCTCCATCTCGAAGAGAATTTAAAGATATTTATGTTGTTTTTGAGTTGATGGAATCTGACCTTCACCAAGTAATTAAGGCAAATGATGATCTCACGCCCGAGCATTATCAATTTTTCTTATACCAGCTTCTTCGAGCTCTAAAATATATACATACAGCAAATGTGTTTCATAGAGATTTAAAGCCAAAAAACATCCTTGCTAATGCAGACTGCAAACTGAAGATTTGTGATTTTGGGCTTGCTCGCGTGTCATTTAATGATACCCCATCAACTATCTTTTGGACTGATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAATACACCCCTGCTATTGATATTTGGAGCATAGGATGTATATTTGCGGAAATGCTTACTGGAAAGCCCTTGTTTCCTGGTAAAAATGTGGTCCAGCAATTGGATCTGATGACTGATTTGCTTGGCACCCCTTCTTATGAATCTATTGCGAGGATTCGAAATGAAAAGGCTAAAAGATATCTGAATAACATGAGAAAAAAATCACCAATTCCTTTCTCGCAGAAATTCCCCAATGCAGATCCATTGGCTGTTCGCTTGCTGGAGCGTTTGCTTGCATTTGATCCTAAAAATCGACCATCTGCTGAAGAGATAAGATTTACTGATCCATATTTTCATGGTTTAGCAAATGCAGACTATGAGCCATGCACACAACCCATTTCAAAATTTTTGTTTGAATTTGAGAGGAGGAGAATGACAAAAGAAGATGTCAGAGAGCTAATTTATAGAGAGATTTTAGAATATCACCCACAGATGTTGCAGGAGTATCTTCAGGGCACTGATTTGACTAGCTTCATGTATCCAAGTGGAGTTGATCGATTTAAGCAACAATTTGCCCATCTTGAGGAACATCATGGTAAAGGTGAAAGAACTGCGCCACGCCTGAGGCAGCATGCCTCCTTGCCTAGGGAGCGGGTCTGTGCTCCCATAGATGACCCTGTTAGCCAAACTAATGATTTTGAAAAGCGTACTGCTGCTTCTGTTGGTCGCACAACACTTCAGAGCCCTCCAAGGTTTCAGGCAATCAATGTATCAGAATCTGCAAACAAGAAGGTAACCACCATGCAGAATGGGGCTAATAAACCAAACTATAGTGCTTGTAGCTTGATGAAGAGTCCCAGCATTAGTGCTTCTAAGTGCATGGAGGTAAAAGAAAGAGACTGTGAGGATGAAGCAATTCCAGAGCAGAATGCAGAGGCAGCTGAAAGGTTATCACAAAAGGTAGCAGCATTGTATGCCTGA 1551 0.4081 MLDKEFFTEYGEATQYEIQEVVGKGSYGVVASAVNTHTGERVAIKKINDVFENVSDATRILREIKLLRLLRHPDIVQIKHIMLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDTPSTIFWTDYVATRWYRAPELCGCFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVQQLDLMTDLLGTPSYESIARIRNEKAKRYLNNMRKKSPIPFSQKFPNADPLAVRLLERLLAFDPKNRPSAEEIRFTDPYFHGLANADYEPCTQPISKFLFEFERRRMTKEDVRELIYREILEYHPQMLQEYLQGTDLTSFMYPSGVDRFKQQFAHLEEHHGKGERTAPRLRQHASLPRERVCAPIDDPVSQTNDFEKRTAASVGRTTLQSPPRFQAINVSESANKKVTTMQNGANKPNYSACSLMKSPSISASKCMEVKERDCEDEAIPEQNAEAAERLSQKVAALYA* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0481 516 CDD STKc_TDY_MAPK 15 353 - -
Vvi1g0481 516 FunFam Mitogen-activated protein kinase 102 331 - -
Vvi1g0481 516 Gene3D Phosphorylase Kinase; domain 1 32 354 - -
Vvi1g0481 516 ProSiteProfiles Protein kinase domain profile. 16 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0481 516 ProSitePatterns MAP kinase signature. 51 154 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi1g0481 516 Pfam Protein kinase domain 16 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0481 516 Gene3D Transferase(Phosphotransferase) domain 1 102 331 - -
Vvi1g0481 516 SMART serkin_6 16 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0481 516 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524
Vvi1g0481 516 SUPERFAMILY Protein kinase-like (PK-like) 13 312 IPR011009 -
Vvi1g0481 516 FunFam Mitogen-activated protein kinase 5 110 - -
Vvi1g0481 516 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0481 Vvi-Chr1 4565691 4571201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0481 2 515 MAP Kinase Gene Family AT3G18040 75.486 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vvi1g0481 Pkinase 9.3e-67 CL0016