Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0480 ATGGAGTCAATAACGTCCAACTTGATCAAGCTCCTCCTCCTCCTCCTCCTCTATTTCCTTCCCTGCTTTCATGCCAAATCACCGCCCACTTCAACGCTTCCTCTTCCCACAAAATCTGGCTACCTCCCTGTCAATCCCACCACCAATTCAGCCATGTTCTACACCTTCTATGATGCACAGAACCCCATATCACCTCTCACCCAAACCCCACTTGTGATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATCGGTAACTTCCTTGAGCTTGGCCCTTGGCGCCTGAATTGTGACAAACACCTTCAACTTGAACCCAATTTGGGTGCATGGAACCGCATATTTGGCCTACTTTTTCTTGACAATCCGATAGGAACGGGATTCAGTATTGCTTCATCACCTAAAGAAATTCCAACAGATCAATATTCTGTTGCCAAGCATCTGTTCTTTGCCATAAGGTCATTTATTGAATTAGACCCATTATTTAAATCACGCTCAATTTATATTACAGGGGAGAGCTATGCAGGAAAGTATGTTCCTGCAATTGGGTATTACATTTTAAAGAAAAATGCACAGTTGTCAGAGTCTCAAGGCGTAAATTTAAGGGGTGTGGCTATAGGGAATGGGTTGACAGACCCAGTGAGACAAGTGGCTACTCATGCTGCGAGTGCTTATTTTTCAGGATTGATCAATGGGAAACAGAAAACCCAGCTGGAAAAAGCTCAGTTGGAGGCCGTAAAGTTGATTAAGGAGGGTAATTGGAGTGAGGCAACAAATGCAAGAAACAGGGTCTTGAATATGTTGCAAGATATGACAGGCCTAGCCACACTATATGATCTTACAAGGAAAGTTCCTTATGAATTCGAATTGGTTGGTGAGTTTTTGAGCAGCGAAGGGGTGAAGAAGGCTTTGGGAGCAAATGTGTCAATAGCTTGGGAGGACTGCAGTGATGTGGTGGGAGAAGCATTGCATGAAGATGTGATGAAGAGCGTGAAATTCATGGTAGAATTGCTGGTGAAGAAGAGCAAGGTGTTGTTATACCAGGGGCAGTTCGATTTGAGAGATGGTGTGGTATCGACTGAGGCTTGGTTGAAGACAATGAAGTGGGAAGGGATTGATAAGTTTCAAGCAGCTGAGAGAAAGGTTTGGAAAGTGAAGGGAGAGCTTGCAGGGTATGTGCAAAAATGGGGAAACTTGAGCCATGTTGTGGTTTCAGGGGCTGGGCACCTTGTGCCTGCTGACCAGTCGGTGAATTCTCAGATAATGATTGAAGACTGGGTTTTGGAGAGGGGATTGTTTGCCAATGAGCAAGAGGCTAATCCATCTAGTTCTTCAACTGGTAATGGTTTTTATGTATAA 1359 0.4489 MESITSNLIKLLLLLLLYFLPCFHAKSPPTSTLPLPTKSGYLPVNPTTNSAMFYTFYDAQNPISPLTQTPLVIWLQGGPGCSSMIGNFLELGPWRLNCDKHLQLEPNLGAWNRIFGLLFLDNPIGTGFSIASSPKEIPTDQYSVAKHLFFAIRSFIELDPLFKSRSIYITGESYAGKYVPAIGYYILKKNAQLSESQGVNLRGVAIGNGLTDPVRQVATHAASAYFSGLINGKQKTQLEKAQLEAVKLIKEGNWSEATNARNRVLNMLQDMTGLATLYDLTRKVPYEFELVGEFLSSEGVKKALGANVSIAWEDCSDVVGEALHEDVMKSVKFMVELLVKKSKVLLYQGQFDLRDGVVSTEAWLKTMKWEGIDKFQAAERKVWKVKGELAGYVQKWGNLSHVVVSGAGHLVPADQSVNSQIMIEDWVLERGLFANEQEANPSSSSTGNGFYV* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0480 452 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 415 IPR001563 GO:0004185|GO:0006508
Vvi1g0480 452 FunFam Carboxypeptidase 24 434 - -
Vvi1g0480 452 Gene3D alpha/beta hydrolase 24 439 IPR029058 -
Vvi1g0480 452 Pfam Serine carboxypeptidase 32 427 IPR001563 GO:0004185|GO:0006508
Vvi1g0480 452 ProSitePatterns Serine carboxypeptidases, histidine active site. 399 416 IPR033124 GO:0004185
Vvi1g0480 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 399 412 IPR001563 GO:0004185|GO:0006508
Vvi1g0480 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 130 IPR001563 GO:0004185|GO:0006508
Vvi1g0480 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 180 IPR001563 GO:0004185|GO:0006508
Vvi1g0480 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 107 119 IPR001563 GO:0004185|GO:0006508
Vvi1g0480 452 ProSitePatterns Serine carboxypeptidases, serine active site. 169 176 IPR018202 GO:0004185
Vvi1g0480 452 SUPERFAMILY alpha/beta-Hydrolases 31 427 IPR029058 -
Vvi1g0480 452 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0480 Vvi-Chr1 4560997 4562355 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0480 284 427 Calmodulin-binding Proteins AT2G22960 23.026 8.06e-09 53.5