Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0479 ATGGAGTCAACAACGTCCAACTTGATCAAGCTCCTCCTCCTCCTCCTCTATTTCCTTCCCTGCTTTCATACCAAATCACCACCCGCTTCAACACTTCCTCTTCCCACAAAATCTGGCTACCTCCCTGTCAATCCCACAACCAATTCAGCCATGTTCTACACTTTCTATGAAGCACAGAACCCCATATCACCTCTCACCCAAACCCCACTTGTGATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGATCGGTAACTTCCTTGAGCTTGGCCCTTGGCGCCTGAATCGTGACAAACACCTTCAACTTGAACCCAATTTGGGTGCATGGAACCGCATATTTGGCCTACTTTTTCTTGATAATCCGGTAGGAACGGGATTCAGTGTTGCTTCTTCACCTAAAGAAATCCCAACAGATCAATATTCTGTTGCCAAGCATCTATTCTTTGCCATAAGGTCATTTATTGAATTAGACCCATTATTCAAATCACGCTCAATTTATATTACAGGGGAGAGCTATGCAGGAAAGTATGTTCCAGCAATTGGGTACCACATTTTGAAGAAAAACTCACGGTTACCAGAGTCTCAGCGTGTGAATTTAAGGGGTGTTGCTATAGGGAATGGGCTGACAGACCCAGTGAGACAAGTGGCTACTCATGCTGCGAGTGCTTATTTTTCAGGATTGATCAATGGGAAACAGAAAACCCAGCTGGAAAAAGCTCAGTTGGAGGCCGTTAAGTTGATCAAGGAGGGTAACTGGAGTGAGGCAACAAATGCAAGAAACAGGGTCTTGAATATGTTGCAAGATATGACAGGCCTAGCTACACTATATGATCTTACAAGGAAAGTTCCTTATGAATTGGAATTGGTTGGTGAGTTTTTGAGCAGCGAAGGGGTGAAGAAGGCTTTGGGAGCAAATGTGTCAATAGCTTGGGAGGACTGCAGTGATGTGGTGGGAGAAGCATTGCATGAAGATGTGATGAAGAGCGTGAAATTCATGGTAGAATTGCTGGTGAAGAAGAGCAAGGTGTTGTTGTACCAGGGGCAGTTCGATTTGAGAGATGGAGTGGTATCAACCGAAGCTTGGATGAAGAGCATGAAGTGGGAGGGGATTGATAAATTTCAAGCGGCTGAGAGGAAGGTTTGGGAAGTGAAGGGAGAGCTTGCAGGGTATGTGCAGAAATGGGGGAGCTTGAGCCATGTTGTGGTTTCAGGGGCTGGACACCTTGTGCCTGCTGACCAGCCAGTGAATTCTCAGATCATGATAGAAGATTGGGTTTTGGAGAGGGGATTGTTTGGCAATGAGCAAGAGAGAAATTAA 1320 0.4598 MESTTSNLIKLLLLLLYFLPCFHTKSPPASTLPLPTKSGYLPVNPTTNSAMFYTFYEAQNPISPLTQTPLVIWLQGGPGCSSMIGNFLELGPWRLNRDKHLQLEPNLGAWNRIFGLLFLDNPVGTGFSVASSPKEIPTDQYSVAKHLFFAIRSFIELDPLFKSRSIYITGESYAGKYVPAIGYHILKKNSRLPESQRVNLRGVAIGNGLTDPVRQVATHAASAYFSGLINGKQKTQLEKAQLEAVKLIKEGNWSEATNARNRVLNMLQDMTGLATLYDLTRKVPYELELVGEFLSSEGVKKALGANVSIAWEDCSDVVGEALHEDVMKSVKFMVELLVKKSKVLLYQGQFDLRDGVVSTEAWMKSMKWEGIDKFQAAERKVWEVKGELAGYVQKWGSLSHVVVSGAGHLVPADQPVNSQIMIEDWVLERGLFGNEQERN* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0479 439 FunFam Carboxypeptidase 23 433 - -
Vvi1g0479 439 SUPERFAMILY alpha/beta-Hydrolases 31 426 IPR029058 -
Vvi1g0479 439 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 415 IPR001563 GO:0004185|GO:0006508
Vvi1g0479 439 Coils Coil 230 250 - -
Vvi1g0479 439 Pfam Serine carboxypeptidase 31 426 IPR001563 GO:0004185|GO:0006508
Vvi1g0479 439 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 129 IPR001563 GO:0004185|GO:0006508
Vvi1g0479 439 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 118 IPR001563 GO:0004185|GO:0006508
Vvi1g0479 439 PRINTS Carboxypeptidase C serine protease (S10) family signature 398 411 IPR001563 GO:0004185|GO:0006508
Vvi1g0479 439 PRINTS Carboxypeptidase C serine protease (S10) family signature 154 179 IPR001563 GO:0004185|GO:0006508
Vvi1g0479 439 Gene3D alpha/beta hydrolase 23 434 IPR029058 -
Vvi1g0479 439 ProSitePatterns Serine carboxypeptidases, serine active site. 168 175 IPR018202 GO:0004185
Vvi1g0479 439 ProSitePatterns Serine carboxypeptidases, histidine active site. 398 415 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0479 Vvi-Chr1 4557702 4559021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0479 283 426 Calmodulin-binding Proteins AT2G22960 24.342 6.35e-10 56.6