Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0477 ATGGCATTGGCAGTCTCAGTTGTGCGATCTTGTGGCATGTGTTGCAGTGAGAAACCCTTGAGAATTGCAATAGCATTTGAAGCTGAGAGAGGATATCAAAATGCTTTGGGTAGAAAAATGAGGTTCAGCAATTTTCTCCTTTCCAAAATTTCAAAATTATGCTCCCGATCAAAGCACAAATTTCCAGAAAAACTCTTGGATGAAGTAGATAGTTATGGCAAGGCGAGCATCTCAGATCGGTCAAAGTTGCTTAATAAGGTATCAGTTTTGATGGGTTATGATAGTTTGCATGATCTAATTGAGAATGAGAGAGTTCAAAAGGAATCTGATATGAATCTAAAAGATGAAATCAATAATGTTGATATCTCGTTGGCATGTAGAAAATTTCCATCCATCATCTTGGGTAATTCTCCACCGGTGGAATTGTATGATGAGAATAAATGTCATAGTGATGTGAGGAGCCTTTTAGCAGCTCAAATCTGTGAAGAATTTCTCTCCAGTTCAGGTGCTGAGAAGTGGGATGGTCCAGATAGGTTTTCTGAAACATGGCCTTCTTTATGTCCCACCCTTCCAAATATTAATGCTTCATTATTAAGAAAAGAAAGTTCTTCCACTTTGCCCGTTTCTTCTCAGCCTCTAACTATGGAGACTAAAGAAAAGTCAGATGTCTTAGTCACAGTGGAGGGCCCCCCTGCTAATATGGTGCTTGAATCACAAAATAATGCTGAACCAGTTGAGTTGATTCTTGATAAATCTATCAGTTTCATACCAGGATTACAAAAGAGGCACTGTCGTCAACTGGAAAATTGTGGCTTTCACACGTTGCGGAAATTGCTACAGCATTTTCCTCGGACGTACGCTGATCTAAAAAATGCACTGATTGGAATTGATGATGGGCAATATATGATCTCCATCGGAAAAATCTTATCTTCCAGGGGGGTTAAAGCCAGTTGTTCTTTTTCGTTTCTTGAGGTAGTTGTGGGTTGTGAGATTGCAGACTGTGAATCAAAGTATGAGCAGATGATTGGTGCTAATGATAGTTGGGGAAAGAAAACAATTTATTTGCATTTGAAAAAATTTTTCCGCGGCACTCGTTTTACAAATGTGCCTTTTCTTAGATGTCTTCAAGAGAAGCATAAAGAAGGGGATATTGTATGTGTCAGTGGTAAGGTGAGGACTATGCGTACAAAAGACCATTATGAAATGAGAGAATATAATTTGGATTTGATTGAAGATGATCAAGATTCATCTGTTTGTCCCAAAGGGAGGCCATACTCTATATACCCTTCAAAAGGCGGTTTGAATTCAAATTTTCTTAGGGACATTATTTCAAGAGCTTTACACAGTTTGCCTGTCAATATTGATCCTATTCCTAAAGATATTATTGAGGACTTCGGGCTATTATCCCTTCACAGTGCTTATGTGGGGATTCACCAGCCAAAGGATTTAAAAGAGGCTGATTTAGCTCGCAAAAGGTTGATATTTGATGAGTTCTTTTATCTTCAGCTAGGGCGCTTATTCCAAATCCTTGAAGGTCTTGGTACAAAAATAGAGAAGGATGGATTGCTGGATAAGTACAGAAAACCTGAATTGAATACTGTTTTTGTTGAGGAATGGTCCAGTCTCACCAAGAATTTCTTGAAGGCTCTTCCATATTCCCTCACTTCAAGTCAGCTCAGCGCTGCTTCAGAAATTATCTGGGATCTAAAGCGACCAGTCCCTATGAATCGACTTTTACAGGGTGATGTTGGATGTGGGAAAACTGTGGTAGCTTTTCTGGCATGTATGGAGGTTATTGGTTCAGGTTATCAGGCAGCTTTCATGGTTCCAACTGAGCTGCTTGCTCTCCAACATTATGAGCAACTCATCAATTTGCTGGAGAATATGGAGGGGGCTGAGTGCAAACCTTCTATTGCTTTACTCACAGGTTCAACACCATCAAAGCAATCGCGGATGACTCATAAGGGTCTTCAAAATGGAGACATCTCATTGGTCATTGGAACCCACAGTTTAATATCTGAAAAAGTGGAATTCTCTGCTTTACGCATTGCTGTGGTGGATGAACAACATCGTTTTGGTGTGATCCAAAGAGGAAGGTTTAACAGTAAGTTATATTATAATTCTATTAGTTCAAGAATGGCCGAGGCTAGTTCAGATGTGTTGTCAGAAGGAGATACACGTATGGCTCCTCATATTCTTGCAATGTCAGCTACTCCTATACCAAGGACACTTGCTCTTGCTTTATATGGAGACATGTCCCTGACACAAATAACCGATTTACCTCCTGGGAGAACACCAGTTGAAACATACACTATTGAAGGATGCGATGCTGGCTTTGAGGATGTCTACCAGATGATGTTGGATGAGCTAGAAGTAGGGGGGAAAATTTATATTGTATATCCAGTCATTGAACAATCTGAACAACTGCCTCAGCTTCGTGCTGCCTCTACAGATCTTGAAACTATATCTAGTAGGTTTCAGGGTTACAAATGTGGTTTGTTACATGGGAGAATGAAAAGTGATGAGAAAGATGAAGCATTGAGACGATTTAGGTCTGGAGAAACAAATATCCTGCTTTCTACCCAAGTAATTGAGATTGGTGTTGATGTTCCAGATGCATCTATGATGGTTGTTATGAATGCTGAGAGATTTGGGATAGCTCAGCTACACCAACTCAGAGGACGAGTTGGACGTGGAGTGAGGAAGTCTAAATGTTTATTAGTATCATCTACAGCTAGTGGCCTAAATCGATTGAAGGTGCTGGAAAACTCATCTGATGGTTTTTACCTAGCAAATATGGACCTCCTTTTGCGTGGACCTGGAGACTTGCTTGGTAAGAAACAGTCAGGACATCTTCCAGAGTTTCCTATTGCTAGATTGGAGATTGATGGAAATATTCTGCAAGAAGCACATCTTGCTGCACTGAAAATTTTAGGCACTTCTCATGATTTGGAGCAATTCCCGGAGCTCAAAGCTGAGCTTAGCATGCGGCAACCGCTTTGTCTTCTGGGTGATTGA 3018 0.4036 MALAVSVVRSCGMCCSEKPLRIAIAFEAERGYQNALGRKMRFSNFLLSKISKLCSRSKHKFPEKLLDEVDSYGKASISDRSKLLNKVSVLMGYDSLHDLIENERVQKESDMNLKDEINNVDISLACRKFPSIILGNSPPVELYDENKCHSDVRSLLAAQICEEFLSSSGAEKWDGPDRFSETWPSLCPTLPNINASLLRKESSSTLPVSSQPLTMETKEKSDVLVTVEGPPANMVLESQNNAEPVELILDKSISFIPGLQKRHCRQLENCGFHTLRKLLQHFPRTYADLKNALIGIDDGQYMISIGKILSSRGVKASCSFSFLEVVVGCEIADCESKYEQMIGANDSWGKKTIYLHLKKFFRGTRFTNVPFLRCLQEKHKEGDIVCVSGKVRTMRTKDHYEMREYNLDLIEDDQDSSVCPKGRPYSIYPSKGGLNSNFLRDIISRALHSLPVNIDPIPKDIIEDFGLLSLHSAYVGIHQPKDLKEADLARKRLIFDEFFYLQLGRLFQILEGLGTKIEKDGLLDKYRKPELNTVFVEEWSSLTKNFLKALPYSLTSSQLSAASEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLALQHYEQLINLLENMEGAECKPSIALLTGSTPSKQSRMTHKGLQNGDISLVIGTHSLISEKVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYNSISSRMAEASSDVLSEGDTRMAPHILAMSATPIPRTLALALYGDMSLTQITDLPPGRTPVETYTIEGCDAGFEDVYQMMLDELEVGGKIYIVYPVIEQSEQLPQLRAASTDLETISSRFQGYKCGLLHGRMKSDEKDEALRRFRSGETNILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGVRKSKCLLVSSTASGLNRLKVLENSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAHLAALKILGTSHDLEQFPELKAELSMRQPLCLLGD* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0477 1005 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 925 983 IPR045562 -
Vvi1g0477 1005 CDD DEXHc_RecG 493 761 - -
Vvi1g0477 1005 Pfam Helicase conserved C-terminal domain 783 899 IPR001650 -
Vvi1g0477 1005 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 568 757 IPR014001 -
Vvi1g0477 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 761 954 IPR027417 -
Vvi1g0477 1005 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 781 936 IPR001650 -
Vvi1g0477 1005 SMART helicmild6 817 900 IPR001650 -
Vvi1g0477 1005 SMART ultradead3 550 773 IPR014001 -
Vvi1g0477 1005 SUPERFAMILY Nucleic acid-binding proteins 248 451 IPR012340 -
Vvi1g0477 1005 NCBIfam ATP-dependent DNA helicase RecG 270 973 IPR004609 GO:0003678|GO:0006281|GO:0006310
Vvi1g0477 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 761 IPR027417 -
Vvi1g0477 1005 Gene3D - 515 758 IPR027417 -
Vvi1g0477 1005 Gene3D - 767 938 IPR027417 -
Vvi1g0477 1005 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 31 1000 IPR047112 GO:0006281
Vvi1g0477 1005 Pfam DEAD/DEAH box helicase 577 742 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0477 Vvi-Chr1 4494130 4544155 Dispersed