Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0476 ATGGATGTTATACCTATGCGGTCTTCCAGCTTGGAGCTAACCATATCCGTACCTGGATTCACTTCATCTCCTTCTCTTCCTTCATCGGCAGGAGAAGGGGTTTGTGGGGTGAGAGATTTGGACATAAACCAAGTACCGTTGGGAGCAGAAGAAGAATGGACGACTGGAAGCATGGAAGACGAAGAGGAGAGTGGAAATGGAGGTCCTCCTCGCAAGAAACTTCGACTCTCAAAGGACCAGTCTCGTCTCCTTGAAGAAAGCTTCAGACAAAACCACACCTTAAACCCTAAACAGAAAGAGGCTTTGGCAATGCAATTGAAGCTCAGACCAAGACAAGTTGAGGTCTGGTTTCAAAACCGTAGAGCCAGGAGCAAGCTGAAGCAGACTGAGATGGAATGTGAATACTTGAAGAGATGGTTCGGGTCACTGACGGAGCAGAACAGGAGGCTACAGAGGGAAGTGGAGGAGCTGAGGGCCATGAAGGTTGCCCCGCCAACCGTCATCTCACCCCACAGCTGCGAGCCTCTTCCCGCTTCCACGCTCACTATGTGCCCTCGCTGCGAGCGCGTCACCACCACCTCACTCGGCAAGGACCCCACCAATCGCACCACCTCGCCCACCCTGTCCTCCAAACTCCCCACCGCCCTCCATTCCCGACACTCTTCGGCGGCTTGCTGA 678 0.5369 MDVIPMRSSSLELTISVPGFTSSPSLPSSAGEGVCGVRDLDINQVPLGAEEEWTTGSMEDEEESGNGGPPRKKLRLSKDQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVAPPTVISPHSCEPLPASTLTMCPRCERVTTTSLGKDPTNRTTSPTLSSKLPTALHSRHSSAAC* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0476 225 MobiDBLite consensus disorder prediction 49 75 - -
Vvi1g0476 225 Pfam Homeodomain 71 125 IPR001356 GO:0003677
Vvi1g0476 225 MobiDBLite consensus disorder prediction 192 225 - -
Vvi1g0476 225 FunFam Homeobox-leucine zipper protein 18 56 132 - -
Vvi1g0476 225 SMART halz 127 170 IPR003106 GO:0006355|GO:0043565
Vvi1g0476 225 Pfam Homeobox associated leucine zipper 127 161 IPR003106 GO:0006355|GO:0043565
Vvi1g0476 225 SMART HOX_1 69 131 IPR001356 GO:0003677
Vvi1g0476 225 SUPERFAMILY Homeodomain-like 60 128 IPR009057 -
Vvi1g0476 225 Coils Coil 140 163 - -
Vvi1g0476 225 Gene3D - 63 134 - -
Vvi1g0476 225 CDD homeodomain 70 128 IPR001356 GO:0003677
Vvi1g0476 225 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Vvi1g0476 225 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Vvi1g0476 225 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 52 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0476 Vvi-Chr1 4488301 4491203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0476 37 191 Homeobox Transcription Factor Family AT1G70920 65.823 3.10e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi1g0476 Homeodomain 6.1e-17 CL0123