Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0471 ATGGAGTGCAGTCAGGGTTCCCCATCTTATTATAGCGTACTGGGCATCCGCACTGATTCGTCCATTGAAGAAATACGCCGCGCTTACCGCAAGCTTGCTATGAAATGGCATCCAGATAAGTGGACGAGAACCCCTTCTGTATTGGGTGAAGCCAAGCGTAAATTCCAGCAAATTCAGGAAGCCTATTCAGTACTATCAGACCAGAGGAAAAGAACAGTGTACGATGCAGGCTTGTATAACCCTGATGAAGAGGAGGACGAGGGCTTCTCTGATTTCTTGCAAGAAATGATATCACTTATGGCCAATGTCAAGAGAGAGGGTAAGATCTACACTAGGGAGGAACTACAAAGTATGTTAATGGAGATGGTCCGAGACTTTGAGTCTCCTCAGCTGTTTTGTGGAGCCTCGATTTTTGACAATTCTCGGAGCATGAAGAGAGGTCGATGGGAAACGAACTCAATGGTGGACAGAGGTTCACGTCTCCATGTGTATGGGACCAGCAGTTAG 507 0.4675 MECSQGSPSYYSVLGIRTDSSIEEIRRAYRKLAMKWHPDKWTRTPSVLGEAKRKFQQIQEAYSVLSDQRKRTVYDAGLYNPDEEEDEGFSDFLQEMISLMANVKREGKIYTREELQSMLMEMVRDFESPQLFCGASIFDNSRSMKRGRWETNSMVDRGSRLHVYGTSS* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0471 168 PRINTS DnaJ domain signature 11 29 IPR001623 -
Vvi1g0471 168 PRINTS DnaJ domain signature 29 44 IPR001623 -
Vvi1g0471 168 PRINTS DnaJ domain signature 50 70 IPR001623 -
Vvi1g0471 168 SUPERFAMILY Chaperone J-domain 7 81 IPR036869 -
Vvi1g0471 168 Gene3D DnaJ domain 1 100 IPR036869 -
Vvi1g0471 168 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
Vvi1g0471 168 PANTHER PUTATIVE, EXPRESSED-RELATED 2 150 - -
Vvi1g0471 168 CDD DnaJ 10 67 IPR001623 -
Vvi1g0471 168 Pfam DnaJ domain 10 75 IPR001623 -
Vvi1g0471 168 SMART dnaj_3 8 70 IPR001623 -
Vvi1g0471 168 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0471 Vvi-Chr1 4436815 4437918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0471 10 76 C2H2 Transcription Factor Family AT1G74250 45.588 1.10e-12 63.2