Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0465 ATGGACGCCGGCGGCGAGCTCTTGGCCCTCGTGAACGACGTCGTGGGGGTCTCCGTTGGGTTTGGAGGTGTGTTCAAGCGGGATTGCACGGATCTTGTCCGTAGGATCGCGCTTTTGACGCATTTGTTCGAGGAGATCAGAGATTTCGGGGCTGGTTTGAGGCCTTTGGATGTGTCGACTTCATCGGCGTCTCCCTTGACTTGCCTGTCTGAAGTAGCCAATGCTCTTCAGGCTGCTAAGCGCCTTCTGTCCGCCGCTGGAAATTTCAGTTCCGACGCCTTTTCTGATGGAGCTGCCAAGAAAATTACCTTCCAATTTCAATGTGTTACATGGAAATTGGAAAAAACATTGGGAAATCTACCATATGATCATTTTGAAATCTCAGAGGAAGTTCGAGAACAGGTTGAATTGGTTAGAGCACAGTTGAGAAGAGCAACAGAAAGATATGGTCCTCTGAATTCAAAAGTGGTATCTTGTGCTCTATCCCTGCCATTGGACAGAGAAATTCATCCTCGACAGTCTGGAAACAGGGTAACTGGAAGCTTTCATATTGAGAATTTGGGTAACATAAATCCAGAAGCTAAGGCCAAGATGGACAGTGTCCCAAAATGTAACGATTCTCACAGCATTACAGATCAGTTTGTTCCTGAATCTGGAAGGCTAAGTAACTCATCTGCATCAGCTGAGGCCCATCTATCGAATGACATTGATGCAGAAAAAGGTCACAAATCAGCTACAAAGAGTCTAGAGGAAATTAAGAAGCCTGACTCTGTTGTAATTCCCAATGATTTCCTATGCCCTATATCCCTCGAACTGATGAGGGATCCTGTTATTGTGGCCACAGGACAGACCTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGCAACTTAACATGTCCAAAAACACAGCTTGAGCTTCAAAATCTGACACTCACCCCAAATTATGCTTTGAGAAGTTTAATTACTCAATGGTGCACTAAGAACAATATTGAGCAACCAACTGGATTAGTCAATGGGAGGATAAAAAAGAGTGATGGGACATTTCGTGATGTCAGTGGAGATATAGCAGCCATTGAGGCATTGGTCCGCAAACTATCAAGCTGGTCCATTGAGGAGCGCAGAGCTGCTGCTACTGAAATCCGATCACTCTCCAAACGAAGCACGGATAACAGGATACTAATAGCAGAAGCAGGAGCCATTCCAGCTCTAGTCAACCTGTTAACAACAGATGATGTGGTAACTCAAGAAAATGCAGTTACTTCCATTCTAAACCTCTCCATTTATGAGAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCTTCTATTGTCCTAGTCCTTAGAAGTGGAAGCATGGAGGCAAGGGAGAATGCTGCCGCAACACTTTTTAGCTTGTCAGTTGCAGATGAGAACAAAATTATAATAGGTGCCTCTGGAGCAATGCCGGCTTTGGTAGAACTGCTCCAAAACGGAAGCACGAGAGGAAAGAAAGATGCTGCAACAGCACTTTTCAATTTATGCATTTATCAAGGAAACAAGAGCAGGGCTGTGAAGGCAGGGATCATTACTGCATTATCAAAGATGCTCACAGATTTAAACAATTGCATGGTGGATGAAGCTCTCACAATACTATCCGTTCTTTCTAGCCACCAAGAAGCTAAAATTTCCATAGTAAAGGCTAGCATCATACCAGTATTGATAGATCTTTTGAGGACAGGTCTGCCCCGCAACAAAGAGAATGCTGCTGCCATTTTGCTTTCCCTGTGCAAGAGAGATAATGAGAATCTTGCCTGTATTAGTAGGCTTGGCGCTGTCATACCCCTTGCTGAGCTTGCTAAGAGCGGCACAGAGAGGGCCAAGCGCAAGGCTACTTCATTGTTGGAGCATCTTCAAAGATTACAGCAACTCTGA 1920 0.4469 MDAGGELLALVNDVVGVSVGFGGVFKRDCTDLVRRIALLTHLFEEIRDFGAGLRPLDVSTSSASPLTCLSEVANALQAAKRLLSAAGNFSSDAFSDGAAKKITFQFQCVTWKLEKTLGNLPYDHFEISEEVREQVELVRAQLRRATERYGPLNSKVVSCALSLPLDREIHPRQSGNRVTGSFHIENLGNINPEAKAKMDSVPKCNDSHSITDQFVPESGRLSNSSASAEAHLSNDIDAEKGHKSATKSLEEIKKPDSVVIPNDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNLTCPKTQLELQNLTLTPNYALRSLITQWCTKNNIEQPTGLVNGRIKKSDGTFRDVSGDIAAIEALVRKLSSWSIEERRAAATEIRSLSKRSTDNRILIAEAGAIPALVNLLTTDDVVTQENAVTSILNLSIYENNKGLIMLAGAIPSIVLVLRSGSMEARENAAATLFSLSVADENKIIIGASGAMPALVELLQNGSTRGKKDAATALFNLCIYQGNKSRAVKAGIITALSKMLTDLNNCMVDEALTILSVLSSHQEAKISIVKASIIPVLIDLLRTGLPRNKENAAAILLSLCKRDNENLACISRLGAVIPLAELAKSGTERAKRKATSLLEHLQRLQQL* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0465 639 FunFam RING-type E3 ubiquitin transferase 539 638 - -
Vvi1g0465 639 Gene3D - 343 432 IPR011989 -
Vvi1g0465 639 Gene3D - 433 539 IPR011989 -
Vvi1g0465 639 SMART Ubox_2 263 326 IPR003613 GO:0004842|GO:0016567
Vvi1g0465 639 FunFam RING-type E3 ubiquitin transferase 437 537 - -
Vvi1g0465 639 Pfam Armadillo/beta-catenin-like repeat 390 428 IPR000225 GO:0005515
Vvi1g0465 639 Pfam Armadillo/beta-catenin-like repeat 472 510 IPR000225 GO:0005515
Vvi1g0465 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 333 IPR013083 -
Vvi1g0465 639 FunFam RING-type E3 ubiquitin transferase 343 436 - -
Vvi1g0465 639 SUPERFAMILY RING/U-box 258 334 - -
Vvi1g0465 639 SUPERFAMILY ARM repeat 359 633 IPR016024 -
Vvi1g0465 639 Coils Coil 128 148 - -
Vvi1g0465 639 SMART arm_5 430 470 IPR000225 GO:0005515
Vvi1g0465 639 SMART arm_5 595 635 IPR000225 GO:0005515
Vvi1g0465 639 SMART arm_5 512 552 IPR000225 GO:0005515
Vvi1g0465 639 SMART arm_5 389 429 IPR000225 GO:0005515
Vvi1g0465 639 SMART arm_5 553 593 IPR000225 GO:0005515
Vvi1g0465 639 SMART arm_5 471 511 IPR000225 GO:0005515
Vvi1g0465 639 MobiDBLite consensus disorder prediction 214 243 - -
Vvi1g0465 639 ProSiteProfiles U-box domain profile. 259 333 IPR003613 GO:0004842|GO:0016567
Vvi1g0465 639 MobiDBLite consensus disorder prediction 214 231 - -
Vvi1g0465 639 FunFam RING-type E3 ubiquitin transferase 259 334 - -
Vvi1g0465 639 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
Vvi1g0465 639 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 482 524 IPR000225 GO:0005515
Vvi1g0465 639 Gene3D - 540 638 IPR011989 -
Vvi1g0465 639 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 400 442 IPR000225 GO:0005515
Vvi1g0465 639 PANTHER U BOX DOMAIN-CONTAINING 26 633 - -
Vvi1g0465 639 Coils Coil 619 639 - -
Vvi1g0465 639 Pfam U-box domain 260 331 IPR003613 GO:0004842|GO:0016567
Vvi1g0465 639 CDD RING-Ubox_PUB 261 313 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0465 Vvi-Chr1 4353672 4357753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0465 3 638 U-box Gene Family AT1G23030 60.802 0.0 729