Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0464 ATGAGGAAGCCCTGCTGTGATAAGCAAGATACCAACAAAGGAGCTTGGTCCAAGCAGGAAGACCAGAAGCTGATAGATTACATTCGAAAAAACGGCGAAGGCTGCTGGAGAACCCTCCCTCAGGCTGCAGGCCTACTTCGTTGCGGTAAAAGTTGTCGCTTAAGATGGATAAATTATCTAAGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTTATCATCAAACTTCATGCACTCCTAGGCAACCGCTGGTCACTGATAGCTGGGAGACTGCCTGGAAGGACAGACAATGAAGTAAAGAACTACTGGAATTCTCATTTAAGGAGAAAGCTAATAAACATGGGTATTGACCCAAATAATCATCGTCTGAGCCACAATTTCCCTCGCCCTCGGGACCCATGTACCGCTGCGACCGCAACATCATCTGGTTTGAACAACCATGCAAGTCCGCCGGTAAAATCGGTTGGTGATAATGATCAGACATCTGATGCCGGAAGCTGTTTAGATGATAACCGGCGTGCCTTACCTGATTTGAACCTTGATGTCGCAATCACCATTCCTCAACCTTCACTAGATACTACCGAAGAGGCGAAGAAACATAATGAGTCCAAAGTATCGAGGGAGCTTGAACCTGGTCCCTCTTCCACGCTGCTCCTCTTTGGATGA 678 0.469 MRKPCCDKQDTNKGAWSKQEDQKLIDYIRKNGEGCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGIDPNNHRLSHNFPRPRDPCTAATATSSGLNNHASPPVKSVGDNDQTSDAGSCLDDNRRALPDLNLDVAITIPQPSLDTTEEAKKHNESKVSRELEPGPSSTLLLFG* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0464 225 FunFam Transcription repressor MYB4 68 134 - -
Vvi1g0464 225 MobiDBLite consensus disorder prediction 126 174 - -
Vvi1g0464 225 CDD SANT 68 111 IPR001005 -
Vvi1g0464 225 MobiDBLite consensus disorder prediction 197 211 - -
Vvi1g0464 225 Gene3D - 13 65 - -
Vvi1g0464 225 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Vvi1g0464 225 CDD SANT 15 60 IPR001005 -
Vvi1g0464 225 MobiDBLite consensus disorder prediction 139 171 - -
Vvi1g0464 225 Gene3D - 68 132 - -
Vvi1g0464 225 MobiDBLite consensus disorder prediction 190 225 - -
Vvi1g0464 225 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vvi1g0464 225 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 164 - -
Vvi1g0464 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vvi1g0464 225 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vvi1g0464 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vvi1g0464 225 FunFam MYB-related transcription factor 12 65 - -
Vvi1g0464 225 SMART sant 65 113 IPR001005 -
Vvi1g0464 225 SMART sant 12 62 IPR001005 -
Vvi1g0464 225 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Vvi1g0464 225 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0464 Vvi-Chr1 4330134 4331211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0464 2 211 MYB Transcription Factor Family AT4G38620 52.889 1.87e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi1g0464 Myb_DNA-binding 2e-13 CL0123