Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0462 ATGATGGTTATGGAGAAAATTCTGCTGTTTCATCTCCTTTCTTTAGCTTTGTTGGGAGCTGTTGTAGAGGCTACACGGTCAGATGACAGACTGATAAAGATATCACAGTTGAAAATGTTTGTTGATGAGCTTCCAGACATGCCAAAAATCCTCGGTTTCGACGTTGTCAATGGCGTTCCAGTTTCCAAGTCCCTGCAGATTGGCATGTTTTCGAAGAAATGGAAATTCCACAGAGATCTCCCGCCGACCCGTGTATTTGCCTATGGTACTTCCAATAACACCGCAACGGTTCCTGGTCCAACCATCGAGGCCCTCTACGGAGTTGACACTTACGTGACGTGGCGAAATTACCTCCCATCAAAACACATCTTACCCTGGGACCCAACCATCCCAACTGCCATTCCCGCCACGAAGAAGGGCGTCCCAACGGTTGTTCATCTCCACGGGGGCATCGACGAACCCCAGAGCGATGGAAACGCCAACTCATGGTTCACCCGTGGCTTCAGAGAAAGAGGCCCCACCTGGACCCAAAAGAAGTACCACTACTACAACATCCAGCAACCAGGCAATATGTGGTACCATGATCATGCAATGGGTTTGACTCGAGTCAACCTTCTGGTTGGCTTGATTGGGGCCTACATCATCCGTCATCCTGATATTGAGTCCCCACTCGGACTCCCTCATGGAAAGGAGTTTGATCGACCCTTGGTCGTATTCGATCGAAGCTTTCGCACCGATGGTTCCATCTACATGAATAGAACAGGAAACAATCCCTCCATTCATCCACAATGGCAGCCGGAGTATTTTGGTGATGCAATCATAGTCAACGGAAAAGCCTGGCCACGTTTGACAGTACGACGTCGTAAATATAGATTCCGCATCATCAACGCAAGCAACGCTCGCTTCTTCGAGTTCTTCTTCACCAACGGTCTACGATTCATCCACGTCGGCTCCGACTCATCTTATAACAAACGTCCGGTCATGATAAAAAAAATCCTCCTGGCCCCATCAGAGATTGTCGATGTGATTGTTGACTTTTCGGAGTCGAAATCCGATTCGGCTATTCTAGCAAACGGTGCGGCTTATCCCTACCCAAGTGGCGACCCAGTCAACAAGTTCAACGGTAACGTGATGAAGTTCATCATCAAGCGGCAACGCGAGGTTGACACGTCGCGGGTCCCGAAGAGATTGATAAAATACCCATCACCCGATTTATCCAATGCAGCAGCAACACGGTACATAGCAATGTACGAGTACACGAGCCCCACCGATGAGCCAACCCATCTGTTTTTGAACGGAAAACCGTACGAAGCACCGGCGACGGAGACACCCAAAGAGGGGACCAGTGAGATCTGGAACGTGATCAATCTGACGGCGGATAATCACCCGCTGCACATCCACCTGGGGCTGTTCGTGGTGTTAGAACAGAGAAAGCTGGTGGACGTGGAAAAGTTCAAGGAGTGCATGTTGAAGATCAACAATGCCGTCAAGTGCCAGATAAGCAAGTATGCACGTGGCAACATAACAGCAGTGCCAGCTCACGAGCAGGGTTGGAAAAATGTGTTCAAGATGACGCCGGGGTATGTGACCAAAATACTGGTGAGATTTGCTTACATACACTCCAACGCATCGTATCCGTTCGATGCATCCGCAGAGCCTGGTTACGTGTACCATTGCCACATTTTGGATCATGAAGACAATGCGATGATGAGACCCTTGAAGTTCATCAAATAA 1734 0.4913 MMVMEKILLFHLLSLALLGAVVEATRSDDRLIKISQLKMFVDELPDMPKILGFDVVNGVPVSKSLQIGMFSKKWKFHRDLPPTRVFAYGTSNNTATVPGPTIEALYGVDTYVTWRNYLPSKHILPWDPTIPTAIPATKKGVPTVVHLHGGIDEPQSDGNANSWFTRGFRERGPTWTQKKYHYYNIQQPGNMWYHDHAMGLTRVNLLVGLIGAYIIRHPDIESPLGLPHGKEFDRPLVVFDRSFRTDGSIYMNRTGNNPSIHPQWQPEYFGDAIIVNGKAWPRLTVRRRKYRFRIINASNARFFEFFFTNGLRFIHVGSDSSYNKRPVMIKKILLAPSEIVDVIVDFSESKSDSAILANGAAYPYPSGDPVNKFNGNVMKFIIKRQREVDTSRVPKRLIKYPSPDLSNAAATRYIAMYEYTSPTDEPTHLFLNGKPYEAPATETPKEGTSEIWNVINLTADNHPLHIHLGLFVVLEQRKLVDVEKFKECMLKINNAVKCQISKYARGNITAVPAHEQGWKNVFKMTPGYVTKILVRFAYIHSNASYPFDASAEPGYVYHCHILDHEDNAMMRPLKFIK* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0462 577 CDD CuRO_2_CotA_like 232 383 - -
Vvi1g0462 577 PANTHER CUPREDOXIN SUPERFAMILY PROTEIN 30 576 IPR045087 -
Vvi1g0462 577 FunFam Spore coat protein A 399 577 - -
Vvi1g0462 577 FunFam Spore coat protein A 36 216 - -
Vvi1g0462 577 Pfam Multicopper oxidase 418 573 IPR011706 GO:0005507|GO:0016491
Vvi1g0462 577 SUPERFAMILY Cupredoxins 401 573 IPR008972 -
Vvi1g0462 577 Gene3D - 400 577 IPR008972 -
Vvi1g0462 577 Gene3D - 219 398 IPR008972 -
Vvi1g0462 577 Pfam Multicopper oxidase 271 358 IPR001117 -
Vvi1g0462 577 CDD CuRO_3_CotA_like 411 574 - -
Vvi1g0462 577 ProSitePatterns Multicopper oxidases signature 2. 558 569 IPR002355 GO:0005507
Vvi1g0462 577 Gene3D - 35 215 IPR008972 -
Vvi1g0462 577 FunFam Multi-copper oxidase type I family protein 219 398 - -
Vvi1g0462 577 SUPERFAMILY Cupredoxins 231 348 IPR008972 -
Vvi1g0462 577 CDD CuRO_1_BOD_CotA_like 64 218 - -
Vvi1g0462 577 SUPERFAMILY Cupredoxins 47 220 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0462 Vvi-Chr1 4273851 4277143 Proximal