Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0456 ATGGGTCTCACTCGATTCCTCAAATTTTCTCCGAAAATTTTGAAAACCTCCAACCCCTTCACCATTAGCTTCCATCTTCTTCTTGCTGACGCTGATTTTGTTCGATTGGAATCTATCAAACATGAAAATGAAAATTCATGCGGGTTTTCCCCATTTAGTTTTTGCAGATCAATACATGGCGGTTCAATACGAAACCAGGCGTGCACTGAGACCACTGATGCCACAAACCATCATATAGCCCAAGATACTGGAAAATTGTGTAAACTACTTTGCACTCACTCTAATTCTAGTATTGAATCATTGCTCAATGGCGCTTCGGTCGACGTATCTCCCACGCTGGTCCTGGAGGTCCTGAAGAAGCTCAGCAATTCCGGTGTCATCGCTCTTTCCTTCTTTAGGTGGGCTGAGAAGCAAAAGGGGTTTAAATACAGTACGGAGAACTACAATGCTCTAATTGAAGCCCTGGGCAAGATCAAACAGTTCAAGATGATCTGGAATTTGGTGAATGATATGAGGTCTAAGGGTTTGTTGACCCAAGAGACTTTTGCTTTGATTTCACGGAGGTACGCAAGAGCAAGGAAGGTTAAAGAAGCGGTAGAGACATTTGAGAAAATGGAAAAGTTTGGATTGCAGCCGGTACTCTCAGATTTTAATAGATTACTTGATGCCCTTTGTAAGTCGAGACATGTCGAGAGAGCACAAGAGGTGTTTGATAAAATGAAGGATAGAAAGTTCAGGCCTGATATCAAGTCCTACACGATTTTGTTGGAAGGGTGGGGTCAAGAACAAAATTTGTTGAGATTGGACGAGGTTTATCGAGAGATGAAGGATGAGGGGTTTGAGCCCGATGCTGTGACTTATGGGATACTTATCAACGCCCATTGTAAGGCTAGAAGATACGATGCAGCCGTTGAGTTGTTTCATAAAATGGAAGCAAACAAGTGCATGCCTACTCCTCATATTTATTGTACTCTCATCAATGGGTTGGGCTCCGAGAGGAGATTGACCGAAGCTCTCCAGTTTTTTGAACGATCTAAGGCTAGTGGATTTACTCCAGAGGCACCCACATATAACGCTGTGGTGGGATCTTACTGTCAATCAATGAGGATGGATGATGCCTATCGTATAGTTGATGAGATGAGAAAATGTGGAGTTGGTCCGCAGACTCGAACCTATGATATAATTCTTCATCACTTGATAAAGGCTAGAAGAACAAAGGAAGCTTACCGGGTTTTTCAGGGAATGAGCAGCGAGCCAGGCTGTGAGCCAAGTGTGAGTACATACGAGATTGTAGTGAGGATGTTTTGCAATGAAGAGAGAGTGGATATGGCGTTAAGGGTATGGGATGAAATGAAAGCCAAGGGAGTTCTTCCTGGAATGCACATGTTCTCAACGTTAATTAACAGCTTGTGCTATGAGAATAAGTTAGACGAGGCCTGCAAATACTTTCACGAAATGTTGGACATGGGTATCAGGCCTCCAGCAGCAATGTTCAGCAATTTGAAACAAACTCTACTTGATGAGGGAAAGCAGGATATGGTTCTAATTTTGGCTCAGAAGCTTGACAAAATCAGGACAACTCAAGTGATTGGTTGA 1596 0.4298 MGLTRFLKFSPKILKTSNPFTISFHLLLADADFVRLESIKHENENSCGFSPFSFCRSIHGGSIRNQACTETTDATNHHIAQDTGKLCKLLCTHSNSSIESLLNGASVDVSPTLVLEVLKKLSNSGVIALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQETFALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLILAQKLDKIRTTQVIG* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0456 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Vvi1g0456 531 Pfam PPR repeat family 387 437 IPR002885 -
Vvi1g0456 531 Pfam PPR repeat family 217 258 IPR002885 -
Vvi1g0456 531 Pfam PPR repeat 279 311 IPR002885 -
Vvi1g0456 531 Pfam PPR repeat 454 486 IPR002885 -
Vvi1g0456 531 Pfam PPR repeat 349 381 IPR002885 -
Vvi1g0456 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Vvi1g0456 531 NCBIfam pentatricopeptide repeat 391 425 IPR002885 -
Vvi1g0456 531 NCBIfam pentatricopeptide repeat 321 352 IPR002885 -
Vvi1g0456 531 NCBIfam pentatricopeptide repeat 217 249 IPR002885 -
Vvi1g0456 531 NCBIfam pentatricopeptide repeat 251 284 IPR002885 -
Vvi1g0456 531 NCBIfam pentatricopeptide repeat 462 493 IPR002885 -
Vvi1g0456 531 NCBIfam pentatricopeptide repeat 285 318 IPR002885 -
Vvi1g0456 531 NCBIfam pentatricopeptide repeat 427 458 IPR002885 -
Vvi1g0456 531 NCBIfam pentatricopeptide repeat 356 387 IPR002885 -
Vvi1g0456 531 NCBIfam pentatricopeptide repeat 148 176 IPR002885 -
Vvi1g0456 531 Pfam PPR repeat 189 210 IPR002885 -
Vvi1g0456 531 Pfam PPR repeat 148 176 IPR002885 -
Vvi1g0456 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Vvi1g0456 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Vvi1g0456 531 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 130 520 - -
Vvi1g0456 531 Gene3D Tetratricopeptide repeat domain 345 415 IPR011990 GO:0005515
Vvi1g0456 531 Gene3D Tetratricopeptide repeat domain 211 272 IPR011990 GO:0005515
Vvi1g0456 531 Gene3D Tetratricopeptide repeat domain 273 344 IPR011990 GO:0005515
Vvi1g0456 531 Gene3D Tetratricopeptide repeat domain 416 492 IPR011990 GO:0005515
Vvi1g0456 531 Gene3D Tetratricopeptide repeat domain 85 210 IPR011990 GO:0005515
Vvi1g0456 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vvi1g0456 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Vvi1g0456 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Vvi1g0456 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0456 Vvi-Chr1 4216052 4217647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0456 114 524 Glycosyltransferase AT1G05670 23.317 2.12e-22 99.4