Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0454 ATGGTGGTTTTTGGCGGGAAAAGAGTGGCTCAGCTGGCAGGTCTTGGTGGGAACGGTGTGGGTCAGATTCTGGCTGCCGTCGCGGCTGCTCTGTTGTTCCGTCTCTTCTCTGGCCCCGGACCGGCGGTGTTGCCGGAAAACGAGGTGGAGGATGACAGGGACGAGATAGCTGGAGATAGTGAGGGCGGCGAAGCTCCTATCGCTGGGAAAGTTTTTCCTGTGACAATCCAGTGGAGCAACATAACATGCTCCCTCTCTGACAAATCTTCCAAATCAGTACGATTTTTGCTAAAAAATGTAAGTGGAGAGGCAAAACCTGGAAGGCTACTTGCAATCATGGGGCCATCTGGATCGGGGAAAACAACTCTGCTCAATGTTCTTGCAGGTCAGCTAATGGCGTCACCCCGGTTGCATTTGTCAGGTCTTTTGGAGGTCAATGGAAAGGCTAGATCAAAGAAAGCTTATAAGTTTGCTTATGTGAGACAAGAGGACCTGTTTTTCTCACAGTTGACAGTCCGTGAAACATTGTCTCTTGCTGCTGAACTCCAGCTCCCAGAGCTATCTTCTGTGGAAGATAGAGATGAATATGTGAACAATCTCTTGTATAAACTAGGTTTGGTCAGCTGTGCTGATTCCAATGTTGGTGATGCAAAAGTTCGTGGAATCAGTGGTGGTGAAAAGAAACGTTTGTCACTTGCATGTGAACTGATTGCAAGCCCATCTGTGATATTTGCAGATGAACCCACAACTGGACTCGATGCTTTCCAGGCAGAAAAGGTGATGGAGACACTCCGACTACTTGCACAGGATGGACACACTGTAATTTGTTCCATACACCAGCCTAGAAGTTCAGTGTATGGGAAATTTGACGACATTGTATTGCTAACAGAAGGTGCACTTGTTTATGCTGGGCCAGCACGGGATGATCCACTGGCATACTTCTCAAGATTTGGGTATCATTGCCCCGATCATGTGAATCCTGCTGAATTTTTGGCTGATCTCATATCCATAGACTATAGTTCTGCTGACAGTGTCTACTCTTCTCAGAAAAGGATAGATGGTCTTGTTGAATCATTCTCACAACAAACATCAGCAGTTCTTTATGCGACTCCTCTTACCAGAAGGGAGAGCTTTAAGAGCACCAGGAAATTCAGTGAGAAAGCTGTTGTTAAGAAAAAGGGGGTTTGGTGGAGGCAGTTCTGGTTGCTCCTTAGACGTGCATGGATGCAGGCTTCTCGTGATGGACCAACAAATAAAGTTCGGTCAAGGATGTCAATTGCATCAGCTATAATATTTGGGTCGGTTTTCTGGAGAATGGGACGATCTCAGACATCAATACAGGACAGAATGGGATTGCTTCAGGTTGCTGCAATAAATACAGCAATGGCTGCACTGACAAAAACTGTGGGTGTGTTTCCCAAGGAACGAGCAATTGTAGATAGAGAGCGTGCTAAGGGGTCTTATGCTTTAGGACCTTATCTACTTTCTAAATTGTTAGCTGAGATCCCGGTTGGAGCCGCATTTCCATTAATGTTTGGGGCTGTTTTGTACCCCATGGCTCGTCTTCATCCTACTTTGTTCAAATTTGGGCAGTTCTGTGGAATTGTGACAGTGGAGTCTTTTGCTGCATCTGCTATGGGTCTAACTGTGGGGGCCATGGTTCCGACCCCTGAAGCAGCAATGGCTGTGGGGCCCTCTCTTATGACAGTTTTTATTGTATTTGGAGGCTATTATGTCAACGCAGAGAATACACCAATTATATTCCGGTGGATTCCTCGTATTTCGCTGATAAGATGGGCATTTCAGGGGCTTTGCATTAATGAATTTAGTGGTCTTGAATTTGATCACCAGCAGCCATTTGATATTCAAACTGGAGAACAGGCACTTGAGCGGCTCTCATTTGGAGGCAGTCGCATTAGAGATACAGTGATGGCTCAAAGTAGAATACTGCTGTTTTGGTATTTCACCACTTACCGTCTCCTTGAGAGGAACAAGCCCAAATACCAGCAGCTTGAGCCACCATCTCCTGATCAAGTCCAACCACCCCTACAACTTGAGCCTTCTGATACTGACCAAGCTAAACCAAACCAGCAACTCGAGCCTCCTCTTGCTCAAGTTGAATCAACCCAGAAGCTTGAATCACCTCCCCTTGACCAAATCCAACCATTTATCCTAGAAGGTGCTAAGTAA 2190 0.4616 MVVFGGKRVAQLAGLGGNGVGQILAAVAAALLFRLFSGPGPAVLPENEVEDDRDEIAGDSEGGEAPIAGKVFPVTIQWSNITCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKARSKKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPELSSVEDRDEYVNNLLYKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVMETLRLLAQDGHTVICSIHQPRSSVYGKFDDIVLLTEGALVYAGPARDDPLAYFSRFGYHCPDHVNPAEFLADLISIDYSSADSVYSSQKRIDGLVESFSQQTSAVLYATPLTRRESFKSTRKFSEKAVVKKKGVWWRQFWLLLRRAWMQASRDGPTNKVRSRMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLLAEIPVGAAFPLMFGAVLYPMARLHPTLFKFGQFCGIVTVESFAASAMGLTVGAMVPTPEAAMAVGPSLMTVFIVFGGYYVNAENTPIIFRWIPRISLIRWAFQGLCINEFSGLEFDHQQPFDIQTGEQALERLSFGGSRIRDTVMAQSRILLFWYFTTYRLLERNKPKYQQLEPPSPDQVQPPLQLEPSDTDQAKPNQQLEPPLAQVESTQKLESPPLDQIQPFILEGAK* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0454 729 MobiDBLite consensus disorder prediction 682 716 - -
Vvi1g0454 729 FunFam ABC transporter G family member 7 74 312 - -
Vvi1g0454 729 ProSitePatterns ABC transporters family signature. 222 236 IPR017871 GO:0005524|GO:0016887
Vvi1g0454 729 SMART AAA_5 106 299 IPR003593 GO:0016887
Vvi1g0454 729 Pfam ABC-2 type transporter 398 609 IPR013525 GO:0016020|GO:0140359
Vvi1g0454 729 Pfam ABC-2 type transporter 279 336 IPR043926 GO:0140359
Vvi1g0454 729 MobiDBLite consensus disorder prediction 668 729 - -
Vvi1g0454 729 Pfam ABC transporter 97 249 IPR003439 GO:0005524
Vvi1g0454 729 Gene3D - 73 310 IPR027417 -
Vvi1g0454 729 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 76 322 IPR003439 GO:0005524
Vvi1g0454 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 308 IPR027417 -
Vvi1g0454 729 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 64 628 - -
Vvi1g0454 729 MobiDBLite consensus disorder prediction 44 65 - -
Vvi1g0454 729 CDD ABCG_EPDR 73 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0454 Vvi-Chr1 4195496 4204502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0454 96 304 Calmodulin-binding Proteins AT2G36910 25.455 1.83e-09 59.3