Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0446 ATGCAAGCCTCAGTCTCAGCAATTGCTGATACAAAGGTTGATTGCAAGTCGCATAAGATGGATTTCAAACATGGGTCATCTCCAAGGAAACTGGTGGAATGCAGGATATGCCAGGATGAGGATGAAGATTCAAATATGGAGACACCCTGCTCCTGCTGTGGTAGCTTGAAGTATGCTCACCGCAGTTGTGTACAGAGGTGGTGTAATGAGAAGGGCAACACCATGTGTGAGATATGCCAGCAGCAATTCAAGCCAGGTTATACAGCACCACCTCCACTGTTTCAATTTCGGGGTATTCCAATAAATTTGAGGGGAAATTGGGAGATTTCCAGGGGAGAGTTGAATAATCCCCGGTTTATAGCAATGGTTTCTACAGACCGTAATTTCCTGGATCCTGATTACAATGAGTTTACAACTTCTACTTCAAGAAGCATGATGTGTTGTCGTTCAGTTGCCATCATTTTCATGGTTCTTCTGATTTTGCGGCATACTCTACCTGTCATGATTAATGGAGCCGAGGAGTATACTTTCCCATTATTCATGTTGGTACTATTGCGAACTGCTGGGATTATTCTGCCAATCTACATCATGCTGAGAGCGGTCACTGCTATCCAGCGACGCCCGCGCCAACAGGACCCTCCTACTCCATATGCTTCAACCGATGAAGAAACCGAGCAGCCAGCCCTGCAGCCTCAGACCCACATCATCCATGTTCCCTGA 720 0.4625 MQASVSAIADTKVDCKSHKMDFKHGSSPRKLVECRICQDEDEDSNMETPCSCCGSLKYAHRSCVQRWCNEKGNTMCEICQQQFKPGYTAPPPLFQFRGIPINLRGNWEISRGELNNPRFIAMVSTDRNFLDPDYNEFTTSTSRSMMCCRSVAIIFMVLLILRHTLPVMINGAEEYTFPLFMLVLLRTAGIILPIYIMLRAVTAIQRRPRQQDPPTPYASTDEETEQPALQPQTHIIHVP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0446 239 ProSiteProfiles Zinc finger RING-CH-type profile. 26 86 IPR011016 GO:0008270
Vvi1g0446 239 SMART ringv_2 33 80 IPR011016 GO:0008270
Vvi1g0446 239 CDD RING_CH-C4HC3_MARCH 34 80 - -
Vvi1g0446 239 Pfam Protein of unknown function (DUF3675) 85 201 IPR022143 -
Vvi1g0446 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 89 IPR013083 -
Vvi1g0446 239 ProSiteProfiles Zinc finger RING-type profile. 34 80 IPR001841 -
Vvi1g0446 239 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 11 211 IPR033275 -
Vvi1g0446 239 MobiDBLite consensus disorder prediction 208 231 - -
Vvi1g0446 239 FunFam Zinc finger family protein 22 89 - -
Vvi1g0446 239 Pfam RING-variant domain 34 79 IPR011016 GO:0008270
Vvi1g0446 239 MobiDBLite consensus disorder prediction 207 239 - -
Vvi1g0446 239 SUPERFAMILY RING/U-box 32 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0446 Vvi-Chr1 4134517 4137298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0446 33 80 C3H Transcription Factor Family AT2G37950 45.098 3.76e-06 44.7