Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0435 ATGGCTTCTCGGAGGCTCTTATCTTCTCTTCTTCGATCGTCCGTACGCCGATATTCGGCCAAATCTCCGGCAATCAGCCCTAGAACTCCATCGCCTTACCCTTCTTCTCGCCCTTCTCCAAAGGGTTTTCTCCTCAACCGCGCTGTTGACTATGCAACGTCGGCCGCTGCCGCGGCATCACCACCGCCGCCACCGCCCGCGAAGGGAGCGGGGCCGAGCGGGAAAATCACTGACGAGTTCACTGGCGCCGGTGCGATTGGCAGTGTCTGTCAGGTGATCGGTGCCGTCGTCGATGTCAGATTCGATGAGGGGTTGCCACCGATCTTGACGGCCCTGGAGGTTCTGGACAATTCGATTCGGTTGGTGTTGGAGGTTGCCCAGCATTTGGGAGAGAACATGGTGAGGACCATTGCTATGGATGGAACGGAAGGGCTCGTGCGTGGACAGAGAGTCCTCAATACTGGTTCTCCTATCACTGTGCCTGTTGGTAGGGCTACCCTTGGCCGCATCATTAATGTTATTGGAGAGCCTATCGATGAAAGGGGCGAAATCAAAACCGACCACTTTTTGCCTATTCATCGAGAAGCTCCATCCTTTGTTGATCAAGCCACTGAACAACAGATCCTCGTTACTGGAATCAAGGTTGTCGATCTCCTTGCGCCATACCAAAGAGGTGGAAAGATTGGGCTGTTTGGTGGTGCTGGAGTAGGAAAAACTGTGCTTATTATGGAACTTATAAACAATGTTGCCAAAGCTCATGGTGGTTTTTCTGTGTTTGCTGGTGTTGGAGAGCGTACTCGAGAGGGTAATGACTTGTACAGGGAAATGATTGAGAGTGGTGTGATTAAGCTTGGGGATAAGCAGAGCGAAAGCAAGTGTGCACTTGTGTATGGTCAAATGAATGAGCCCCCTGGTGCCCGTGCTCGTGTTGGGCTTACTGGATTGACTGTGGCTGAGCACTTTCGTGATGCTGAAGGACAAGATGTGCTTCTCTTTATTGACAACATTTTCCGCTTTACCCAAGCTAACTCTGAGGTGTCTGCTTTGCTTGGTCGTATTCCATCTGCTGTCGGTTATCAACCAACCTTAGCAACAGATCTTGGAGGCCTTCAAGAGCGTATTACAACAACCAAGAAAGGCTCCATCACATCTGTCCAAGCCATTTATGTGCCTGCTGATGACTTGACTGATCCAGCTCCTGCAACCACCTTTGCTCACTTGGATGCCACAACTGTGTTGTCCCGACAGATCTCTGAGCTTGGTATCTATCCTGCTGTTGATCCTCTTGATTCTACATCTCGTATGCTTTCCCCACATATTTTAGGAGAGGAGCATTACAACACAGCTCGTGGGGTACAAAAGGTTCTTCAGAACTACAAAAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAGTTGACTGTTGCCCGTGCTCGTAAAATTCAACGATTCTTGAGCCAGCCTTTCCACGTTGCAGAAGTTTTCACTGGTGCCCCTGGAAAGTATGTGGAGTTGAAAGAGAGCATTACCAGCTTCCAGGGAGTTTTGGATGGAAAATATGATGACCTTTCAGAACAGTCCTTCTACATGGTTGGAGGAATTGAAGAAGTCATTGCTAAAGCAGAGAAGATTGCAAAGGAATCTGCTGCCTAA 1674 0.4904 MASRRLLSSLLRSSVRRYSAKSPAISPRTPSPYPSSRPSPKGFLLNRAVDYATSAAAAASPPPPPPAKGAGPSGKITDEFTGAGAIGSVCQVIGAVVDVRFDEGLPPILTALEVLDNSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDERGEIKTDHFLPIHREAPSFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESITSFQGVLDGKYDDLSEQSFYMVGGIEEVIAKAEKIAKESAA* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0435 557 CDD F1-ATPase_beta_CD 159 438 - -
Vvi1g0435 557 Hamap ATP synthase subunit beta [atpB]. 84 551 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vvi1g0435 557 FunFam ATP synthase subunit beta 158 435 - -
Vvi1g0435 557 Pfam ATP synthase F1 beta subunit 1 47 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Vvi1g0435 557 CDD ATP-synt_F1_beta_C 440 547 - -
Vvi1g0435 557 Gene3D - 436 556 IPR024034 -
Vvi1g0435 557 Gene3D ATP synthase, F1 beta subunit 1 51 IPR042079 -
Vvi1g0435 557 FunFam ATP synthase subunit beta 75 157 - -
Vvi1g0435 557 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 212 433 IPR000194 GO:0005524
Vvi1g0435 557 PIRSF ATPase_subunit_beta 7 557 - -
Vvi1g0435 557 ProSitePatterns ATP synthase alpha and beta subunits signature. 424 433 IPR020003 GO:0005524
Vvi1g0435 557 PANTHER ATP SYNTHASE 75 554 - -
Vvi1g0435 557 FunFam ATP synthase subunit beta 1 51 - -
Vvi1g0435 557 Pfam ATP synthase alpha/beta family, beta-barrel domain 89 155 IPR004100 GO:0046034|GO:1902600
Vvi1g0435 557 Gene3D - 158 435 IPR027417 -
Vvi1g0435 557 Gene3D - 75 157 - -
Vvi1g0435 557 NCBIfam F0F1 ATP synthase subunit beta 86 551 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vvi1g0435 557 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 84 157 IPR036121 GO:0046034|GO:1902600
Vvi1g0435 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 439 IPR027417 -
Vvi1g0435 557 MobiDBLite consensus disorder prediction 17 76 - -
Vvi1g0435 557 FunFam ATP synthase subunit beta 436 555 - -
Vvi1g0435 557 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 436 552 - -
Vvi1g0435 557 SMART AAA_5 224 496 IPR003593 GO:0016887
Vvi1g0435 557 CDD ATP-synt_F1_beta_N 85 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0435 Vvi-Chr1 4078796 4083374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0435 122 494 Primary Pumps ATPases(2) AT1G20260 28.429 5.99e-28 115