Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0428 ATGGAAGAGAGCCTGTTGGTGAAGGGCAAAGGTGGAGAGAAAAGGGGGGAGGGTTTAAGATGGGTTTTGGTGGGTGAAGAAGTGAAGAGGTTGGGTTGCTTGGCTGCACCCATGGTTGCTGTGATTCTATCACAGTACTTGTTACAAGTTATATCTCTAATGATGGTTGGACACCTGGGTGAGCTTGCTCTCTCTAGCACCGCCATAGCCATCTCCCTCTCTGGCGTCACCGGCTTTAGTTTTCTCTTAGGAATGGCTAGTGCACTGGAGACTCTATGTGGGCAAGCTTATGGAGCAGAACAATATCACAAGCTGGGAACTCAAACCTACACTGCTATTGTCTCCCTTTTATTGGTTTGTCTTCCTCTAGCTGTCATATGGCTCTACATGAGCAAACTGCTTACTTTTATAGGCCAGGACCCTGTAATTTCACATGAAGCCGGTCAATTCTCAATTTGGCTTGTTCCTGCACTCTTCGGTTATGCGACTCTTCAGGCCCTTGTTCGGTACTTACAAACCCAAAGCTTGATCATGCCTTTGCTCCTAACTTCATGCGCCATTCTTGGTTTCCATATACCTCTCTGTTGGGCTTTAGTATTCAAGTCTGGACTAGGTAGCCTTGGAGGGGCACTTGCAATTGGTATTTCATACTGGTTGAATGTAATTTTCCTTGGATTATACATTAAGTACTCTCCTGCTTGTGAGAAAACTCGTGTCCCGGTTTCAATGGAGATACTTGGAGGAATCGGAGAGTTTTTCCGCTTCGCTATCCCGTCAGCTGTAATGATTTGTCTAGAGTGGTGGTCGTTTGAGCTGCTTATATTGCTGTCCGGACTTCTACCTAACCCAGAGCTTGAAGCCTCTGTTCTCTCTGTATGTCTCAACACCGTCTCAACTCTGTATGCAATACCACATGGACTGGGTTCGGCTGGAAGCACAAGAGTTTCAAATGAATTAGGAGCTGGGAACCCGCAAAAGGCTCGTCTAGCTGTTCATGCAGCGGTATGTCTTGCAGTGACAGAGGCCATTGTTATAAGCACAACCCTCTTTGTCAGTCGGCGTGTTTTCGGTTATGTATTCAGCGAGGAAGAGGAAGTTGTGGATTATGTCACGAACATAGCTCCTTTCCTTTGTCTGTCTGTTATCTTAGACAGCGTACAAGGGACTCTTTCTGGTGTTGTTAGGGGATGCGGGCGGCAGCGTATCGGGGCTTTTATTAACCTTGGGGCATTTTATCTCTGTGGCATCCCAGTAGCTGTCATATTGGCTTTCGTGGTACATCTACGAGGAAAAGGCCTCTGGGTTGGACTGCAAACTGGTTCTCTTCTACAAACAAGTCTGCTTTTGATCATAACTGGCTGCACAAATTGGGAAGAGCAGGCAACCAAGGCACGGCAGAGGATATTTGAGGGAACATCTTCAGTAGAAAACGGAGTACTAATGTGA 1446 0.4668 MEESLLVKGKGGEKRGEGLRWVLVGEEVKRLGCLAAPMVAVILSQYLLQVISLMMVGHLGELALSSTAIAISLSGVTGFSFLLGMASALETLCGQAYGAEQYHKLGTQTYTAIVSLLLVCLPLAVIWLYMSKLLTFIGQDPVISHEAGQFSIWLVPALFGYATLQALVRYLQTQSLIMPLLLTSCAILGFHIPLCWALVFKSGLGSLGGALAIGISYWLNVIFLGLYIKYSPACEKTRVPVSMEILGGIGEFFRFAIPSAVMICLEWWSFELLILLSGLLPNPELEASVLSVCLNTVSTLYAIPHGLGSAGSTRVSNELGAGNPQKARLAVHAAVCLAVTEAIVISTTLFVSRRVFGYVFSEEEEVVDYVTNIAPFLCLSVILDSVQGTLSGVVRGCGRQRIGAFINLGAFYLCGIPVAVILAFVVHLRGKGLWVGLQTGSLLQTSLLLIITGCTNWEEQATKARQRIFEGTSSVENGVLM* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0428 481 CDD MATE_eukaryotic 27 463 IPR045069 GO:0042910|GO:1990961
Vvi1g0428 481 PANTHER MULTIDRUG RESISTANCE PROTEIN 24 457 - -
Vvi1g0428 481 NCBIfam MATE family efflux transporter 37 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi1g0428 481 Pfam MatE 258 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi1g0428 481 Pfam MatE 37 196 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0428 Vvi-Chr1 4021808 4024501 Wgd