Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0425 ATGAAAGGGCGAGAAAATCCAGCAGAGGATGCCTTAATTCTTCTCAGAAGTAGAATTTGTAACCCTAATTTCGTCTTCACACCATTTTCCGATTCACCCGACAGCAATTACAGCAAGTTGAAATTCATTATATCAAGCTCAGTGACCGAGGCATGTAACAATTCAATCCTTCTTCTTGGTCCTCGTGGTTCTGGAAAAACGGCGGTGTTGGAGCTTGTTATCAGAGATCTATTGGCAGAACATGCTGATATGATATCAGTGATCAGATTGAATGGGCTTTTGCACAGTGATGACAATTGTGCAGTCAAGGAAATTGCTAGACAATTGTGTGTGGAGCATCAGTTGTTGTTCTCAAAAATGGCATCATTTGACGATAATTCCCAGTTCATGATAGCTATGTTACGGGAGTGTGGATTAGCTCACAAGACAATCATTTTTGTATTGGATGAGTTTGACTTCTTCACTCAGGGGAAACAACGATTACTTTATAGCTTGTTGGATGCAATGCAATCTGTGACGTCACAAGCAGTTGTCATTGGTGTCAGTTGCAGACTAGATGCAGATCAACTCTTGGAAAAAAGAGTAAGATCTCGTTTTTCACATAGAAAGGTGTTGTTTCTTCCACCCTCAAAGGAAGATCTACAAAGATTGTTAGAGCACATTTTTTCTTTGCCAGTAGACACGAGCCTTCCAAATGACTATGCTGTTGAGTTCAATATGAAACTCCATCATATATTGGCAGATGAGAGATTTAAAGAAATCATTAATACCTTGTTGAATTCTGATTCCACTGTCAAACATTTGTTGAGGTTTCTATTTTATGCTGTTTGTCATATGGATTTGGAATCTGGGTTCCTGTCACTTGATAACTTCAGAACAGCAATGTCAAGCATCCAAAGGCAGCCAAAGATGGAATATTTACAAGATTGCTCCATTTTGGAACTCTATATTTTGGTGTGCATGAAGAGGTTGGAAGTCAAAGAGCAAAACTCATACAATTTCAATTCTGTAATGAAAGAATACAAAGGCATACATGATGCATACCAGACATCCGATTATTATGCACGGAATGTATGCTTACGGGCTTTTGAACACCTTGTACAACGTGAATTAATCTGTTTTATGGATAATAGGGGAAACAATCAATCTATAGAATTTCGTGCAGTGAAGCTACTAATCTCATCACATGAACTCTATCAGGGATTGAAATCATATCGCTCTTGTCCTGTAAGTTCCTACAAAAATAGTGTGTGA 1254 0.3836 MKGRENPAEDALILLRSRICNPNFVFTPFSDSPDSNYSKLKFIISSSVTEACNNSILLLGPRGSGKTAVLELVIRDLLAEHADMISVIRLNGLLHSDDNCAVKEIARQLCVEHQLLFSKMASFDDNSQFMIAMLRECGLAHKTIIFVLDEFDFFTQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKVLFLPPSKEDLQRLLEHIFSLPVDTSLPNDYAVEFNMKLHHILADERFKEIINTLLNSDSTVKHLLRFLFYAVCHMDLESGFLSLDNFRTAMSSIQRQPKMEYLQDCSILELYILVCMKRLEVKEQNSYNFNSVMKEYKGIHDAYQTSDYYARNVCLRAFEHLVQRELICFMDNRGNNQSIEFRAVKLLISSHELYQGLKSYRSCPVSSYKNSV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0425 417 CDD AAA 54 205 - -
Vvi1g0425 417 PIRSF ORC4 5 414 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Vvi1g0425 417 FunFam Origin of replication complex subunit 4 34 208 - -
Vvi1g0425 417 Pfam AAA ATPase domain 38 174 IPR041664 -
Vvi1g0425 417 Gene3D - 34 208 IPR027417 -
Vvi1g0425 417 SMART AAA_5 52 209 IPR003593 GO:0016887
Vvi1g0425 417 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 220 400 IPR032705 -
Vvi1g0425 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 263 IPR027417 -
Vvi1g0425 417 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 6 412 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0425 Vvi-Chr1 4004382 4010867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0425 3 410 Core DNA Replication Machinery Family AT2G01120 67.470 0.0 586