Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0424 ATGACCCTCTGTCTGAGAGCTTCAAAAGCTTCGGCTACCATAAACCCTACCCGTTCTATCAAGGTACGCCTTCTCTTCCCATGTTCCTTCTCTTTTCATGATTCCACTTCAAACCATTCAGCTCCACCTTTCTCCGAAACCCATTTCCAGGACGTCATTTCCAAATCAATTCGTGAAAAACCCTCGAATTTTTCCAATTATTACTGGCTCTCCCACCAGTTTGGACCCGTAATTGTCGACCCCGACTTGTTTGTTCGCGTATTGAGTTCGTTTAGGACGAGCCCACGCATGGCTTTGCGGCTCTTCCGATGGGCGGAGAGCCAACCAGGGTTTCGCCGGTCGGAGTTTGTGTTTTGCGCCATTCTTGAAATTCTTGCACAGAATAACTTGATGCGATCAGCCTACTGGGTGATGGAGAGAGTAATTAATGCAAACATGCATCGAATTGTGGACGTTTTGATTGGCGGGTGCGTGAGTTCGGAGGTTTCGGTTAAGATTCTCGATCTTTTGATATGGGTTTACTCTAAAAAATCCATGGTGGAGCAGTGTTTGTCGGTTTTTGATAAAATGATAAAAAGTAGGTTGTCTCCGGATGTCAAGAATTGTAATAGAATACTTAGGATACTTAGAGATAAAGATCTTATGAGCAAAGCTGTAGAAGTTTATAGAACAATGGGTGAGTTTGGGATTAAGCCCACTATTGTTACATACAATACTTTGTTGGATTCGTATTGCAAGGGAGGGAAAGTGCAGCAAGGACTAGATCTATTATCAGAGATGCAAAGAAGAGGGTGTGCTCCAAATGATGTTACTTATAATGTGTTGATAAATGGGTTGTCAAAAAAAGGGGAATTTGAGCAGGCCAAGGGATTGATTGGAGAGATGTTAAAAACAGGGTTGAAGGTTTCAGCTTATACTTATAACCCTTTGATTTATGGATATTTTAACAAGGGAATGCTGGCTGAGGCTTTGAGCCTTCAGGAAGAGATGGTGCTTAAAGGAGCTTCTCCTACAGTGGCAACTTATAATTCATTTATATATGGGCTTTGCAAGTTGGGAAGAATGAGTGATGCTATGCAACAGTTGTCTGACATGTTGGCAAATAATTTGTTGCCAGATGTGGTTTCATACAACACTCTTATTTATGGGTATTGTAGGTTGGGCAACTTGATGAAAGCCTTTCTGTTATTTGATGAGTTAAGGAGTATATATCTCTTTCCTACTATTGTTACCTATAATACCCTTTTAGATGGTCTTTGTAGGCAGGGGGAGTTGGAGGTTGCACAGCAGCTCAAAGTAGAAATGATCAATGAAGGGATAGCCCCTGATATTGTTACTTACACTATTTTAGTAAATGGGTCTTGCAAGATGGGGAGTTTATCGATGGCTCAGGAATTCTTCGATGAGATGTTGCATGAAGGGCTGGAGTTGGACTCCTATGCATATGCAACTCGAATAGTGGGTGAACTGAAGCTTGGTGACACATCCAGGGCATTTAGTCTGCAAGAAGAAATGCTAGCAAAGGGTTTCCCACCTGATTTGATCATCTATAACGTTGTTGTGGATGGACTTTGTAAATTGGGCAATTTGGAAGAAGCATCTGAACTGTTGCAAAAGATGGTTAGTGATGGTGTAATTCCAGATTATGTAACATATACTAGCATCATTCATGCACACTTGGAAAATGGTCGTCTCAGGAAAGGCAGAGAGATCTTCTATGAGATGCTGAGCAAAGGCCTAACACCTTCAGTTGTGACATACACAGTATTGATTCATGGACATGCTGGTAAAGGGAGGCTCGAACGGGCATTTATATATTTCTCAGAAATGCAGGAGAAGGGTATTCTGCCAAATGTGATCACCTATAATTCTCTGATAAATGGTCTTTGCAAAGTAAGGAGAATGGATCAGGCCTACAATTTTTTTGCTGAGATGGTAGAAAAGGGAATATTCCCTAATAAGTATAGCTACACCATCCTGATAAATGAGAACTGCAACATGGGCAATTGGCAAGAAGCTTTAAGTTTGTATAAACAAATGCTAGATAGAGGAGTTCAGCCTGACTCTTGTACACATAGTGCACTACTGAAGCAACTAGGCAAAGACTGTAAACTGCAAGCAGTCAGGCAACTTGAGAGTTTATTAGACAGTGAATAA 2157 0.4121 MTLCLRASKASATINPTRSIKVRLLFPCSFSFHDSTSNHSAPPFSETHFQDVISKSIREKPSNFSNYYWLSHQFGPVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVMERVINANMHRIVDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQLESLLDSE* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Vvi1g0424 718 Pfam PPR repeat 170 194 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 270 303 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 375 401 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 305 338 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 410 444 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 620 653 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 550 583 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 235 268 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 445 478 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 341 374 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 516 548 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 655 689 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 585 619 IPR002885 -
Vvi1g0424 718 NCBIfam pentatricopeptide repeat 174 199 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Vvi1g0424 718 Gene3D Tetratricopeptide repeat domain 368 434 IPR011990 GO:0005515
Vvi1g0424 718 Gene3D Tetratricopeptide repeat domain 648 716 IPR011990 GO:0005515
Vvi1g0424 718 Gene3D Tetratricopeptide repeat domain 297 367 IPR011990 GO:0005515
Vvi1g0424 718 Gene3D Tetratricopeptide repeat domain 227 296 IPR011990 GO:0005515
Vvi1g0424 718 Gene3D Tetratricopeptide repeat domain 579 647 IPR011990 GO:0005515
Vvi1g0424 718 Gene3D Tetratricopeptide repeat domain 80 226 IPR011990 GO:0005515
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Vvi1g0424 718 Gene3D Tetratricopeptide repeat domain 435 578 IPR011990 GO:0005515
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Vvi1g0424 718 Pfam PPR repeat 508 541 IPR002885 -
Vvi1g0424 718 Pfam PPR repeat 299 331 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Vvi1g0424 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Vvi1g0424 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 98 443 - -
Vvi1g0424 718 Pfam PPR repeat family 547 595 IPR002885 -
Vvi1g0424 718 Pfam PPR repeat family 407 456 IPR002885 -
Vvi1g0424 718 Pfam PPR repeat family 232 281 IPR002885 -
Vvi1g0424 718 Pfam PPR repeat family 617 666 IPR002885 -
Vvi1g0424 718 Pfam PPR repeat family 337 386 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0424 334 711 Glycosyltransferase AT1G05670 31.347 1.27e-58 209