Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0423 ATGGCTTCTCTTTGTTGCCCTGCCTCTTGTTCCATCAGATGTTCTAACAGGGACCATCCACATGATCCAAATAAGCAAAAACTGAATAACATCAAGGTACATGGAACTTCTACTATGCCCACAGCTAAGGTTGATCTACTGAGCCAAACAGTAGGAGCAGCAACGGCATTGACTTCAGTTTCTTCCATAGCTGAAAATGGCCATATAACCAAAGAGCAGCTCCGCCAAAATATTCCAACAAAGAAGCAGTTTGTTGATCCATACCGTCAGGGGCTGATTGTCGAAGGGGGTGTCGGATACAGCCAGACAGTGGTTATTCGTTCATATGAAGTTGGACCTGACAAAACTGCAACATTAGAGAGCATCCTTAATCTTTTGCAGGAAACGGCATTGAATCACGTTTGGATGTCGGGACTGCTTGGCAATGGATTCGGGGCTACACATGGAATGATGAGGAACAATCTCATATGGGTTGTCTCAAGAATGCAGGTTCAACTTGATCACTATCCAATCTGGGGAGAAGTAGTAGAAATTGACACATGGGTTGGAGCATCAGGGAAGAATGGAATGCGAAGAGACTGGCTAATTCGAAGTCATGCCACAGGCCAGATTTTTGCAAGAGCAACCAGTACTTGGGTGATGATGAACCAGCAAACCAGGCGCCTTTCAAAAATGCCAGAAGAGGTGAGGGCTGAGATTTCACCCTGGTTTATTGAGAAGCAAGCAATCAAAGAAGATGTCCCTGAAAAAATTGTTAAGTTGGATGATAAAGCAAAATATGTGAACTCCAACTTGAAGCCCAAGAGGAGCGATCTGGATATGAACCACCACGTGAACAATGTGAAGTACGTAAGATGGATGCTTGAGACCATCCCTGATCAATTTTTGGAGAGCCACCAACTGTCCAGCATCATACTAGAATATAGAAGAGAATGTGGAAGTTCAGACATTGTTCAATCCCTATGTGAACCAGATGAGGCTGCAATTCTCAAAGAGGGAGGTCAACAACAACCAAATGAGATCAAATTGCTAAATGGGTTTCCAATGGCATCAGAAATTCTTGATGGCCATGGTCTGCTGAATGGGTCCTTTCACAAGGGGACATTAGGATATACACATGTCCTCCAGACTAAAGGGGGCCGCAAATATGAAGAGATCGTCAGAGGGAGGACAAAATGGAGGACAAAACACTCTGCCATATCCTTTACTTAA 1212 0.4406 MASLCCPASCSIRCSNRDHPHDPNKQKLNNIKVHGTSTMPTAKVDLLSQTVGAATALTSVSSIAENGHITKEQLRQNIPTKKQFVDPYRQGLIVEGGVGYSQTVVIRSYEVGPDKTATLESILNLLQETALNHVWMSGLLGNGFGATHGMMRNNLIWVVSRMQVQLDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSHATGQIFARATSTWVMMNQQTRRLSKMPEEVRAEISPWFIEKQAIKEDVPEKIVKLDDKAKYVNSNLKPKRSDLDMNHHVNNVKYVRWMLETIPDQFLESHQLSSIILEYRRECGSSDIVQSLCEPDEAAILKEGGQQQPNEIKLLNGFPMASEILDGHGLLNGSFHKGTLGYTHVLQTKGGRKYEEIVRGRTKWRTKHSAISFT* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0423 403 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 263 326 IPR029069 -
Vvi1g0423 403 Gene3D Hotdog Thioesterase 92 401 - -
Vvi1g0423 403 CDD 4HBT 100 216 - -
Vvi1g0423 403 Pfam Acyl-ACP thioesterase 99 379 IPR002864 GO:0006633|GO:0016790
Vvi1g0423 403 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 98 246 IPR029069 -
Vvi1g0423 403 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 11 398 IPR045023 GO:0006633|GO:0016297
Vvi1g0423 403 FunFam Acyl-[acyl-carrier-protein] hydrolase 91 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0423 Vvi-Chr1 3994677 3996429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0423 84 402 Acyl Lipid Metabolism Gene Families AT1G08510 46.875 1.06e-97 296