Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0421 ATGTACGCTCTCCAATTTTCCTTCACTCCCCGCCCCAAAACCCTAAAACCCTCCGCACCTCCACCACTTCACATCCTCATGAAGGACCGCCCGCCTCCCTCATGCGTTTCCCGCTATATCCCTCCTCATCATCGTCTGCGCTCCGCCGTCACCTCCTCTGCCTCCCCCAATCTCAACGCCGCTTCTCTTGACTCCACGTCTCGGGATCATCAAGGCACGCTTCTGAACCCTAGGAACACTTCTCTTCCTCACTCCCAACCTCAGAAGCTCCAACAGAAGGATAATTCACTCTATGATTTCCTGTACGAGGAGGTGTCTGAGGAAGGCTCTGATCGCGAAATTGAGTCGTCGTCGCATGGGGGTGCTTCAGCCCCTGATACCATTGATGAGTGGAAGTGGAAGTTTACTATGCTTTTACGCAACAAAGACAAACAAGAGTTGGTGTCAAGGGAGAAAAAGGACAGGCGTGATTTCGAGCAAATAGCTATTTTGGCAAGCAGAATGGGTTTGTATAGCCATCTATATGTAAAAGTTGTTGTCTTTAGTAAGGTTCCACTGCCAAACTACAGATTTGATCTAGATGACAGGCGCCCACAGAGGGAGGTAATTCTACCTCTTGGTTTGGATAGAAGAGTGGAAGCCCATCTTGAGGAGTACCTTTCTCAAAAGTTTACGACAAATGAAAACTTTCAAGATATTGCCTTCTCTAGATCAAGTAGTACTAGTAGCATTGCTACTGATGAAGGGCTTTTTGAGCAACCAGAGCCACTTGCAGTTAGTAGATCTGTCATTGAGAAAATTGTTTGGCGGAGGAGTTTGCAACTGCGGAATCAGCAACAAGCATGGCAGGAATCTACAGAAGGTAGAAAAATGCTGGAATTTCGTGGAAGTCTCCCTGCTTCCAAAGAGAAGGATGCATTACTAACAGCCATTTCAGGAAATCAGGTGGTTATTGTCTCAGGTGAAACTGGTTGTGGCAAGACCACTCAAATTCCCCAATTCATCTTAGAATCTGAGATTGAATCTGTTCGTGGAGCTGTATGTAGTATTATATGTACCCAGCCTAGAAGAATATCTGCCATGTCTGTTTCTGAAAGAGTTGCTGCAGAAAGAGGGGAGAAATTGGGTGAATCCGTTGGGTATAAGGTCCGGCTAGAGGGCATGAAAGGAAAGGATACTTGCCTTCTATTTTGCACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGATTTTCTGCTTATTGTCCTGAAGGATCTCCTTCCTCGCCGGCCAGAACTGAGGTTGATTTTGATGAGTGCAACCTTAGATGCAGAACTTTTCTCATCCTACTTTGATGGGGCTCCAGTTGTCCATATCCCGGGTTTTACATACCCAATTAGAACGTATTTCCTGGAAAATATTCTGGAAATGACAGGATACAGATTGACTCCGTACAATCAAGTTGATGATTATGGTCAGGAAAAGATGTGGAAAATGAACAAACAAGCTCCAAGAAAGAGGAAGAGCCAACTTGCTCCTGTAGTCGAGGATGCACTCAGAGCTACTGATTTCAAGGATTATAGCCCACAAACTCAGGAATCTTTGTCCTGTTGGAATCCTGACTGCATTGGTTTTAACCTCATAGAAAACCTTTTATGCCATATATGTGAGAATGAATGTCCTGGTGCTGTTTTAGTCTTTATGACTGGGTGGGATGACATAAGTTCTCTGAAAGATAAGCTCCAAGCTCATCCCATATTGGGAGATTCAGACCAAGTTTTGTTGCTCACATGCCATGGTTCTATGGCTAGTGCAGAGCAGCGGTTAATATTTGATGAGCCTCGAGATGGGGTAAGGAAAATAGTGCTAGCCACGAATATTGCTGAGACAAGTATCACAATTAATGATGTGGTTTTTGTTGTTGACTGTGGAAAAGCAAAAGAGACATCATATGATGCACTGAATAACACTCCGTGTTTGCTTCCTTCCTGGATCTCTAAGGTTTCTGCTCAACAGAGAAGAGGAAGAGCTGGCCGTGTTCAACCAGGAAAATGTTACCATCTCTATCCTCGATGTGTATATGATGCTTTTGCAGATTATCAATTGCCTGAAATTTTGAGGACACCTTTACAGTCCCTTTGCCTGCAAATCAAAAGTTTAAAACTTGGAAGTATTTCTGAGTTCCTATCTAGGGCTTTGCAGTCTCCAGAGTTGCTAGCGGTTCAAAATGCTATTGAATATTTAAAAATCATTGGGGCTTTAGACGAGAATGAAAATTTGACTGTTTTAGGCCGCCACTTGACAATGCTTCCAATGGAGCCTAAACTTGGAAAGATGCTTATACTGGGGGCTGTCTTCAATTGCCTAGATCCAATACTAACCATCGTTGCTGGACTTAGTGTTAGAGATCCATTCTTAACACCATTGGACAAGAAGGATCTTGCAGAGGCTGCAAAAGCTCAATTTTCTCATGACTACAGTGACCATCTTGCACTTGTTCGGGCTTATGAGGGCTGGAAAGATGCTGAAAAGGACCAAATTGGATATGAATACTGCTGGAAAAATTTTCTTTCTGCACAATCAATGAAAGCTATTGATTCACTTCGGAAGGAGTTCTTCTCTTTGCTAAAGGATACTGACCTGGTTGATGGCAACATGGCCACCTACAATGCATGGAGCTATGATGAGCATCTCATTCGAGCAGTTATTTGCTGTGGCCTGTATCCTGGAATTTGCTCTGTTGTGCAAAATGAAAAGTCATTCTCATTGAAAACAATGGAGGATGGTCAAGTGCTCTTGCATTCGGTAAGTTTCTTCGCCCAAATTATTGTATTTGGGCTACTATTATTTTTCACAAAGTAA 2907 0.4324 MYALQFSFTPRPKTLKPSAPPPLHILMKDRPPPSCVSRYIPPHHRLRSAVTSSASPNLNAASLDSTSRDHQGTLLNPRNTSLPHSQPQKLQQKDNSLYDFLYEEVSEEGSDREIESSSHGGASAPDTIDEWKWKFTMLLRNKDKQELVSREKKDRRDFEQIAILASRMGLYSHLYVKVVVFSKVPLPNYRFDLDDRRPQREVILPLGLDRRVEAHLEEYLSQKFTTNENFQDIAFSRSSSTSSIATDEGLFEQPEPLAVSRSVIEKIVWRRSLQLRNQQQAWQESTEGRKMLEFRGSLPASKEKDALLTAISGNQVVIVSGETGCGKTTQIPQFILESEIESVRGAVCSIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGMKGKDTCLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLDAELFSSYFDGAPVVHIPGFTYPIRTYFLENILEMTGYRLTPYNQVDDYGQEKMWKMNKQAPRKRKSQLAPVVEDALRATDFKDYSPQTQESLSCWNPDCIGFNLIENLLCHICENECPGAVLVFMTGWDDISSLKDKLQAHPILGDSDQVLLLTCHGSMASAEQRLIFDEPRDGVRKIVLATNIAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGKCYHLYPRCVYDAFADYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGALDENENLTVLGRHLTMLPMEPKLGKMLILGAVFNCLDPILTIVAGLSVRDPFLTPLDKKDLAEAAKAQFSHDYSDHLALVRAYEGWKDAEKDQIGYEYCWKNFLSAQSMKAIDSLRKEFFSLLKDTDLVDGNMATYNAWSYDEHLIRAVICCGLYPGICSVVQNEKSFSLKTMEDGQVLLHSVSFFAQIIVFGLLLFFTK* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0421 968 MobiDBLite consensus disorder prediction 48 93 - -
Vvi1g0421 968 FunFam DExH-box ATP-dependent RNA helicase DExH3 558 714 - -
Vvi1g0421 968 Pfam DEAD/DEAH box helicase 308 458 IPR011545 GO:0003676|GO:0005524
Vvi1g0421 968 PANTHER ATP-DEPENDENT RNA HELICASE 237 950 - -
Vvi1g0421 968 MobiDBLite consensus disorder prediction 1 32 - -
Vvi1g0421 968 FunFam Putative ATP-dependent RNA helicase DHX36 738 842 - -
Vvi1g0421 968 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 475 IPR014001 -
Vvi1g0421 968 MobiDBLite consensus disorder prediction 14 28 - -
Vvi1g0421 968 Pfam Helicase associated domain (HA2) 759 839 IPR007502 GO:0004386
Vvi1g0421 968 Pfam Helicase conserved C-terminal domain 565 695 IPR001650 -
Vvi1g0421 968 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 562 736 IPR001650 -
Vvi1g0421 968 SMART ultradead3 296 484 IPR014001 -
Vvi1g0421 968 CDD DEXHc_RHA-like 314 474 - -
Vvi1g0421 968 FunFam DExH-box ATP-dependent RNA helicase DExH3 252 476 - -
Vvi1g0421 968 Gene3D - 738 846 - -
Vvi1g0421 968 Gene3D - 260 476 IPR027417 -
Vvi1g0421 968 SMART helicmild6 590 696 IPR001650 -
Vvi1g0421 968 Gene3D - 557 714 IPR027417 -
Vvi1g0421 968 SMART ha2_5 758 848 IPR007502 GO:0004386
Vvi1g0421 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 871 IPR027417 -
Vvi1g0421 968 CDD SF2_C_RHA 542 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0421 Vvi-Chr1 3945479 3974548 Dispersed/Wgd