Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0417 ATGGCCAGCGTATCAGCAAGTAATCAGGTGAATACTCTGTGCCTTGGAGTATCGGAGCCTATTTCAACTGCTGGGCCCACCGAGTTTGATCTGATTAAGACCCGAGAATTGGAAAAGTTTCTTGCAGATTCTGGATTGTATGAAACTCGGGAAGAAGCTATAAGGAGGGAGGAAGTTCTAGGGAGAGTAGATCAGATAGTGAAGGTATGGGTGAAAACTGTTAGCCGTGCTAAAGGGTTTAATGAACAGCTGGTTCATGAAGCAAATGCAAAGATCTTCACGTTTGGTTCTTATCGATTGGGTGTGCATGGCCCAGGTGCTGATATAGACACATTATGTGTTGGACCTAGACATGCTACTCGAGATGAAGATTTTTTCGGTGAACTTCATAGGATGCTAGCAGAAACACCTGAAGTACAAGAACTGCATCCTGTGCCTGATGCTCATGTTCCTGTCATGAAGTTCAAGTTCAATGGGGTTTCTATAGATCTTCTTTATGCAAGACTATCACTCTGGGTTATTCCTGAAGACTTGGATATTTCACAAGAAACAATACTACAAAATGTAGATGAGCAGACAGTTCGTAGCCTCAATGGTTGCAGAGTTACTGATCAAATTTTGCGCCTGGTCCCAAATATTCAGAATTTTCGCACTACATTGAGATGCATGAGATTCTGGGCAAAGCGGCGTGGGGTTTATTCAAATGTTTCTGGTTTCCTTGGTGGTATAAATTGGGCATTGCTTGTTGCTCGCATATGCCAGCTATACCCAAATGCAGTACCTAGTACCTTGGTATCTCGGTTCTTCAGGGTCTACACGCAGTGGCGTTGGCCTAATCCAGTTATGCTATGTCCTATTGAAGAAAAATGCCTTGGACTTCCTGTTTGGGATCCAAGAAGAAACATCAAAGATAGGAACCATCTGATGCCTATAATAACTCCTGCATATCCTTCGATGAATTCAAGCTACAATGTTAGTTGGAGCACATTACGTATTATGGAAGAAGAGCTTCAGAGGGGAAATGAAATAGTTAAGGAGATGGAGACAGAAAACACTGGCTGGATCACTCTTTTTGAACCTTTCCTTTTCTTTGAAGCATACAAGAACTATCTGCAGATAGATATAACTGCTGAGAATGATGTTGACTTGAGGAACTGGAAAGGTTGGGTTGAATCTCGACTTCGTCTACTTACTCGGAAGATTGAGAGGGACACAGGTGGTATGCTTCAGTGCCATCCACACCCTGCAGAGTTTTCTGACACATCCAGATCATTCCATTACTGTTATTTCATGGGTTTACGGCGGAAAGAAGGCAGTGCTGCCCAGGAAGGTGAACAATTTGATATAAGGTTAACTGTTGATGATTTTAAGAACACTGTATGGATGTATTCATCCTGGAAACGAGGAATGTGGATCCATGTATGCCATATAAGACGCAAAAACATCCCAAATTTTGTCTTCCCTGGTGGAGTCCGGCCTCCCCAACCCATGAAAGTTGCTGGAGAACAAGGACAAGTTTCAAAACCAATGGGCTTTAACTCTCAGAAGAGAAAAAGGGATGAGATAGATGCTGGGAGTCACCCAAGAGAATCCACATCTTTAGTGGAGAATGTGGAGTCAGATTTGCAAGGGGAAGTAAAACTGGAACAGGTTGAGGTTAATGTAGGGGACAGTTTAACCAAGGTAATATGTTCATCTGAGAATTCTTCACACAATAGTATTGAGCTTGAAGGATATGCTAGATGCAGCCAACCCCTTGGGGCTGCATCTTCTGCTAGTGGTTCCTTGAGTTTAGGAAGGGCGCTTGTTATTGAGACAACCTCTGAGCCACTTGTTCATCAATGTTCCTCAAAAGAAGTTGGTGAGTCTCAAGTAGGGTTGGTTGATCAAGTCCAGAATTTTGATGTGGGTAAAAGAGTCAATTGTGTGCAGTCCTCAACAGCAGAGCGAGGGATGGCAGCAGCAGCAGCAGGGCAAGGGTTCAGTCCTTGCTCCAGTCTCTTTCAAAATGGGGGTTTAGAGGAGCTTGAGGATGCTGAGTTGACTGCTCCATTCTACCATGGAAATCCTGGTGCATCAAGTACCCCACAGAAGCACCTTATCAGGTTAAGTGTGAATTCTTTGGTGAAAGCAAGAGGCAAGGGCACTTGA 2151 0.437 MASVSASNQVNTLCLGVSEPISTAGPTEFDLIKTRELEKFLADSGLYETREEAIRREEVLGRVDQIVKVWVKTVSRAKGFNEQLVHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRDEDFFGELHRMLAETPEVQELHPVPDAHVPVMKFKFNGVSIDLLYARLSLWVIPEDLDISQETILQNVDEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLYPNAVPSTLVSRFFRVYTQWRWPNPVMLCPIEEKCLGLPVWDPRRNIKDRNHLMPIITPAYPSMNSSYNVSWSTLRIMEEELQRGNEIVKEMETENTGWITLFEPFLFFEAYKNYLQIDITAENDVDLRNWKGWVESRLRLLTRKIERDTGGMLQCHPHPAEFSDTSRSFHYCYFMGLRRKEGSAAQEGEQFDIRLTVDDFKNTVWMYSSWKRGMWIHVCHIRRKNIPNFVFPGGVRPPQPMKVAGEQGQVSKPMGFNSQKRKRDEIDAGSHPRESTSLVENVESDLQGEVKLEQVEVNVGDSLTKVICSSENSSHNSIELEGYARCSQPLGAASSASGSLSLGRALVIETTSEPLVHQCSSKEVGESQVGLVDQVQNFDVGKRVNCVQSSTAERGMAAAAAGQGFSPCSSLFQNGGLEELEDAELTAPFYHGNPGASSTPQKHLIRLSVNSLVKARGKGT* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0417 716 FunFam Poly(A) polymerase alpha, putative 48 204 - -
Vvi1g0417 716 FunFam Putative poly(A) polymerase gamma 176 358 - -
Vvi1g0417 716 Coils Coil 330 350 - -
Vvi1g0417 716 FunFam Nuclear poly(A) polymerase 4 362 477 - -
Vvi1g0417 716 CDD NT_PAP_TUTase 55 210 - -
Vvi1g0417 716 Gene3D - 16 358 - -
Vvi1g0417 716 Gene3D Poly(A) polymerase predicted RNA binding domain 363 477 - -
Vvi1g0417 716 Pfam Poly(A) polymerase predicted RNA binding domain 363 422 IPR007010 GO:0003723|GO:0043631
Vvi1g0417 716 Pfam Poly(A) polymerase central domain 16 360 IPR007012 GO:0043631|GO:1990817
Vvi1g0417 716 SUPERFAMILY Nucleotidyltransferase 16 209 IPR043519 -
Vvi1g0417 716 Gene3D Beta Polymerase, domain 2 48 204 IPR043519 -
Vvi1g0417 716 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 487 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vvi1g0417 716 Pfam Nucleotidyltransferase domain 77 168 IPR002934 GO:0016779
Vvi1g0417 716 MobiDBLite consensus disorder prediction 513 527 - -
Vvi1g0417 716 PANTHER POLY A POLYMERASE 9 519 - -
Vvi1g0417 716 SUPERFAMILY PAP/OAS1 substrate-binding domain 211 360 - -
Vvi1g0417 716 MobiDBLite consensus disorder prediction 494 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0417 Vvi-Chr1 3898832 3907393 Dispersed/Wgd