Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0414 ATGCCTAAGAGATACTCTTACTCTGATATCCTAGCAATGACAAACTGCTTCCAAGATAAATTAGGGGAAGGTGGTTTTGGTTCAGTTTATAAAGGGTACCTTCCTGGTGGCAGCTCCATTGCTGTTAAGATACTTGGGAACTCAAAGTTTAGTGGGAAAGAATTCATCAATGAAGTCTCAACTATTGGTAGAATCCGCCATGACAATGTGGTACATTTAGTGGGATTTTGTTCTGAGGGATCTAATCAAGCTCTTGTCTATGAATACATGCCTAATGGGTCACTGGATAAGCATATATTCTTGAAGGAGGGGAGAGTTAAGTCATTTGGCTGGGAGAAACTCCATGAAATTGCTCTTGGGACGGCACAAGGAATTGAATATCTACATGGAGGATGTGACATATGCATTCTTCATTTTGACATTAAGCCTCAAAATATCCTGCTAGATCATGATTTCATCCCAAAGATTTCAGACTTTGGCCTTGCAAAATTTTACCCAAAAGGATATGATTTTGTGTCCATTAATACTGCAAGAGGAACAATAGGGTACATAGCTCCTGAACTGATTACACAGAATTTTGGAGCTGTTTCTAGCAAATCGGATGTCTATAGTTTTGGGATGTTATTGTTAGAGATGGCTGGGGGAAGAAGGAATGTTGAGAGCAAGGCAAAGAGTTCGAGCAAAGTTTACTTCCCATCATGGGTTTATGACCATCTTAGTGAGGGAGGAGATTTGGAGCTTGGCAATATTACAGAAGTTGAGATTGAGATAGCAAGAAAGTTGTGCATAGTTGGGCTCTGGTGCATTCAAATGGAGCCATCAGATCGACCTTCGATGACCAAAGTGATAGTAATGCTAGAAGGGAACATTGATGACCTCAAATTGCCTCCTAGGCCTTTCTTTTCTTCTCCTCAACATGTGTCTATAGTAGAGCCTCAATCAGACTCTTCAACAGAGTTGCTGTTATCCGGGTCACAGGAGGAAAGCTTGTACAATAATAGTTAA 1005 0.406 MPKRYSYSDILAMTNCFQDKLGEGGFGSVYKGYLPGGSSIAVKILGNSKFSGKEFINEVSTIGRIRHDNVVHLVGFCSEGSNQALVYEYMPNGSLDKHIFLKEGRVKSFGWEKLHEIALGTAQGIEYLHGGCDICILHFDIKPQNILLDHDFIPKISDFGLAKFYPKGYDFVSINTARGTIGYIAPELITQNFGAVSSKSDVYSFGMLLLEMAGGRRNVESKAKSSSKVYFPSWVYDHLSEGGDLELGNITEVEIEIARKLCIVGLWCIQMEPSDRPSMTKVIVMLEGNIDDLKLPPRPFFSSPQHVSIVEPQSDSSTELLLSGSQEESLYNNS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0414 334 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Vvi1g0414 334 Gene3D Transferase(Phosphotransferase) domain 1 90 294 - -
Vvi1g0414 334 ProSiteProfiles Protein kinase domain profile. 15 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0414 334 MobiDBLite consensus disorder prediction 312 334 - -
Vvi1g0414 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vvi1g0414 334 FunFam serine/threonine-protein kinase PBS1-like 1 89 - -
Vvi1g0414 334 SMART serkin_6 15 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0414 334 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Vvi1g0414 334 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 306 IPR045874 GO:0004672
Vvi1g0414 334 CDD STKc_IRAK 21 288 - -
Vvi1g0414 334 FunFam PR5-like receptor kinase 90 297 - -
Vvi1g0414 334 Pfam Protein kinase domain 19 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0414 334 SUPERFAMILY Protein kinase-like (PK-like) 3 287 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0414 Vvi-Chr1 3887436 3888440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0414 1 318 Receptor kinase-like Gene Family AT5G38280 50.462 1.82e-106 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi1g0414 Pkinase 4.7e-47 CL0016