LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0413	ATGAACTGCTCCAGAACTATGAGTGATCCAGATTATATAAGAGTCCCTTGTTTCAGTGGAAATGCATCTCATATTTATGCCAAGTTCAACAGCTATATGATGTCGGATCTTGGGGAGTCATGTGAGTTTACATCCATGGTTCCAGCTAAATGGCCTGCACATGTGGAGCACCCTTCCTATGGAGATCTACTGAAAGTATTGGCGTCGGGATTCGATCTTTCATGGTCGATTGAGGGCCGGAATTGCCGTTTATCCGGTGGCCGGTGCCAATATACTGGATTCGACGCACCATATGCCTGCTCATGTGAACGAAATCGGCTATCGGAACTTTGGAAAGAAATTAAGGCAGTGCTTAAGCTGCTATTCGTCTTCCTTTCCCTTCCTCTTTTAGTGTGGGTTTCTATAATTCGAGTTATCGCTCCTCCGATCATTATACTGGTTTTCCTCATCCGCAAATTTAGAACAGCACGGAAGCCAGTCGACAGGGTGGAGAAATTTCTACGGAGTCAGCAGTCGTTAATGCCCAAAAGGTACTCTTACGCTGACATTATGGCAATAACAAACCATTTCAAAGATAAATTAGGGGAAGGTGGTTTTGGTTCAGTGTATAGAGGACAGCTTCCTGGTGGTTGCTTCATTGCTGTTAAAATGCTTGGGAAGCACAATTTTAATGGGGAAGAGTTCATCAATGAAGTCTCAACAATCGGCAGGATTCACCATGTCAATGTGGTAAGGCTACTGGGATTTTGCTCTGAAGGGTCTAAACGAGCTCTGGTCTATGAATATATGCCTAATGGGTCACTTGATAAGCATATATTCTTGAAAAAAGGAAAGGTTCAGCCATTTAGCTGGGAGAAACTCCATGAGATTGCTTTAGGAACGGCCCGGGGGATAGAGTATCTACATGGGGGATGTGACATTTGCATACTTCATTTCGATATTAAGCCTCACAATATCCTGCTAGACCACGATTTTGTCCCCAAAATATCAGACTTTGGCCTTGCAAAATTTTACCCAAAGGAATATGATGTCATGTCCATTAGTACAACAAGAGGAACCATAGGGTACATAGCTCCTGAATTGATTTCACGGAATTTTGGAGTTGTGTCCAACAAATCAGATGTTTATAGTTTTGGGATGTGCTGTTAG	1149	0.4291	MNCSRTMSDPDYIRVPCFSGNASHIYAKFNSYMMSDLGESCEFTSMVPAKWPAHVEHPSYGDLLKVLASGFDLSWSIEGRNCRLSGGRCQYTGFDAPYACSCERNRLSELWKEIKAVLKLLFVFLSLPLLVWVSIIRVIAPPIIILVFLIRKFRTARKPVDRVEKFLRSQQSLMPKRYSYADIMAITNHFKDKLGEGGFGSVYRGQLPGGCFIAVKMLGKHNFNGEEFINEVSTIGRIHHVNVVRLLGFCSEGSKRALVYEYMPNGSLDKHIFLKKGKVQPFSWEKLHEIALGTARGIEYLHGGCDICILHFDIKPHNILLDHDFVPKISDFGLAKFYPKEYDVMSISTTRGTIGYIAPELISRNFGVVSNKSDVYSFGMCC*	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0413	382	Pfam	Wall-associated receptor kinase C-terminal	31	104	IPR032872	-
	Vvi1g0413	382	Pfam	Protein kinase domain	190	380	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0413	382	FunFam	serine/threonine-protein kinase PBS1-like	157	262	-	-
	Vvi1g0413	382	Gene3D	Transferase(Phosphotransferase) domain 1	263	382	-	-
	Vvi1g0413	382	FunFam	Os07g0541700 protein	263	353	-	-
	Vvi1g0413	382	ProSitePatterns	Protein kinases ATP-binding region signature.	194	216	IPR017441	GO:0005524
	Vvi1g0413	382	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	309	321	IPR008271	GO:0004672\|GO:0006468
	Vvi1g0413	382	Gene3D	Phosphorylase Kinase; domain 1	152	262	-	-
	Vvi1g0413	382	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	161	381	IPR045874	GO:0004672
	Vvi1g0413	382	SMART	serkin_6	188	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0413	382	SUPERFAMILY	Protein kinase-like (PK-like)	167	381	IPR011009	-
	Vvi1g0413	382	ProSiteProfiles	Protein kinase domain profile.	188	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0413	Vvi-Chr1	3880964	3882374	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0413	30	380	Receptor kinase-like Gene Family	AT1G66910	43.443	7.92e-85	269

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Vvi1g0413		Pkinase	4.7e-42	CL0016