LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0412	ATGAACAAGCTGCCTTCACATTGCAGAAGATTTAAAACAGTTGAGATCATTTCAGTTCATGGCTACGTTGAACTCCAACAAGCCATTGAGAGACTTTTTGAAAGGCAAGAGATCTTCCTCGCTTGGGAAGGGTTAGATGGTTGCTATGAATGTGAAAACTCAGGAAACTTCTGTGGATTCAACAGTACAAGAAATGCAACCATTTGTTCTACTTCCAGGCCCAAAAGGTCACATTCTGCTGTAATCTTAGGAACAAGCATTGGAGGCACCGCCTTTCTTGCTTTGGTTGTACTTGTGTTGTACAGATTTCGAAGATCAGACAGTGAAAAGGAAACTCAGCTCAAGGTAGAGAGGTTCCTGGCAAATTACAAGACCCTCAATCCATCCCGGTATTCCTACAGTGATCTAAAAAAGATAACAGGCAAATTTAGGCACAAAGTAGGCCAAGGAGGTTATGGAACTGTCTACCGAGGAAAATTGCCCAATGGAATACCTGCAGCAGTTAAGATGATCGAGAATTCTAAAGGAAATGGCCAAGAGTTCATTAATGAAGTAGCTACCATAGGTAGGATACACCATTTCAATGTGGTTCGCCTTCTTGGGTTTTGTGCAGAAGGGACGAGGCGTGCTCTGGTCTATGAATTCATGCCAAATGAATCGCTTGAAAAGTTTATCTTCTCATCAAAAGACTCTAAAACAAGAAATCGACCATTTAGTTGGGAGAAGCTTCAACAAATTGCAATGGGCATTGCCCGTGGAATGGAGTACTTGCACCAGGGGTGCAACCAAAGGATCCTTCACTTCGACATCAAGCCCCATAATATTCTACTAGACCACAATTTTCAGCCCAAGATTTCAGATTTTGGGTTGGCCAAGCTATGTTCAAAGGAACGGAGCGTTGTCTCCATGACAGCTGCCAGAGGAACAGCAGGCTACATTGCACCTGAGCTCTTCTCAAGGAACTTTGGAGCAGTTTCTCACAAATCCGATGTTTTTAGCTTTGGAATGTTGTTGTTGGAGATTGTGGGATGTCGAAGAAACATCGATGTTACAGTTGAAAATCAAAGTCAGATTTATTTCCCGGAATGGATTTACAACAGAATGAGTCAGGGGAAGGAGATGGGGCTGGAAATTGAGATAGATGGGGATGAGGAGATTGCCAAGAAGCTTGCAATTGTGGCACTTTGGTGCATTCAATGGAACCCAACAGACAGGCCTTCAATGACAATGGTGGTTCAAATGCTTGAAGGTGACTTGCATGGCTTAGAGATACCTCCAAAGCCTTTTGCTTCTTCAGACATTGAGATGATTGCAACTTGA	1320	0.4303	MNKLPSHCRRFKTVEIISVHGYVELQQAIERLFERQEIFLAWEGLDGCYECENSGNFCGFNSTRNATICSTSRPKRSHSAVILGTSIGGTAFLALVVLVLYRFRRSDSEKETQLKVERFLANYKTLNPSRYSYSDLKKITGKFRHKVGQGGYGTVYRGKLPNGIPAAVKMIENSKGNGQEFINEVATIGRIHHFNVVRLLGFCAEGTRRALVYEFMPNESLEKFIFSSKDSKTRNRPFSWEKLQQIAMGIARGMEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKERSVVSMTAARGTAGYIAPELFSRNFGAVSHKSDVFSFGMLLLEIVGCRRNIDVTVENQSQIYFPEWIYNRMSQGKEMGLEIEIDGDEEIAKKLAIVALWCIQWNPTDRPSMTMVVQMLEGDLHGLEIPPKPFASSDIEMIAT*	440

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0412	439	ProSitePatterns	Protein kinases ATP-binding region signature.	147	169	IPR017441	GO:0005524
	Vvi1g0412	439	CDD	STKc_IRAK	147	417	-	-
	Vvi1g0412	439	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	265	277	IPR008271	GO:0004672\|GO:0006468
	Vvi1g0412	439	ProSiteProfiles	Protein kinase domain profile.	141	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0412	439	SMART	serkin_6	141	415	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0412	439	FunFam	PR5-like receptor kinase	216	427	-	-
	Vvi1g0412	439	Pfam	Protein kinase domain	145	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0412	439	Gene3D	Phosphorylase Kinase; domain 1	114	215	-	-
	Vvi1g0412	439	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	113	431	IPR045874	GO:0004672
	Vvi1g0412	439	Gene3D	Transferase(Phosphotransferase) domain 1	216	421	-	-
	Vvi1g0412	439	SUPERFAMILY	Protein kinase-like (PK-like)	123	416	IPR011009	-
	Vvi1g0412	439	FunFam	serine/threonine-protein kinase PBS1-like	108	215	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0412	Vvi-Chr1	3875426	3879342	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0412	42	429	Receptor kinase-like Gene Family	AT4G18250	45.209	1.86e-117	357

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Vvi1g0412		Pkinase	1.5e-47	CL0016