Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0409 ATGGAGAAAATTTGTGAATTTTGCACATCTTTGAGGCCAGTTGTTTACTGTAAGGCAGATGCAGCACTGCTTTGCCTTTCATGTGATGCAAAGGTTCACTCAGCAAATGCACTTTCCAACCGGCATCCTCGAACCCTACTATGTGAATCATGCAAATGCCGCCCAACTTCTCTTCGATGTTTAGATCACCGGGTGTTTTTGTGTCGTAATTGTGACCGGAGCTTGCATGAAGTTTCTTCACAACATCATAGACGGGCGATTAGAAGTTATGTGGGATGCCCATCTGCTAAGGATTTTGTGGCATTGTGGGGGTTTGAATTGAACGAAATGGAAACTGTTGCTCCTCGAGATCAGTTTGTTTCTACTTCATGTGGTCCTCTGGAGCAAGGTGTGAGAAATTCAAGCTTTTCAAGACATTCTTGCCAACAAGATGGAGTCTCTTCATTGGCTTTTGAACTAAACTCCTCAATTTCAATATTTGGTGCAGAATCTGAGGTGGGATCGAGCACACAACAAAGTAAGGCATTTTACAATGGACAAGGGCAGCAAAAAACATCTGTTATTTTGCAGCAAATTCTTGATTTGAAAAGGCTACAGCTCACTGACAGGAAAAACACATCATCTCTGATACGTGGCCAAGAACAAATTGATATATCTTCATCTAAGTTTAGCACTTCACAAAGGCTTGATGATGATCTTGATGAGCATTCACAAAATTCGCTTGGTATCTGTTCTGATCTTCAGCAAATGGATAGTCCTAAGCAGGAACTGAAAGTGGAGCCTTTTCCCTCACCATTTTCTCAACTGGAGCAGTTATCATCTTCTTCAACTGTTGGAATCCCTTTGCATGGAGACCCCTTCTGGCAATGCAAAAGTCCAATTCAGAGTAGCCAGTTGTGGTCTCAAAATATGCAAGATCTTGGAGTTTGTGAGGATGTTAACTGCTTCGATGATTTTAACATTCCTGATGTTGATCTGACGTTTCAAAACTTTGAAGAGCTCTTTGGGGGTGATCAAGATCCAACCAGATTACCTGTTGACATTGAAGATGTGACGTATTCCTCCTTGGAGTAG 1074 0.4181 MEKICEFCTSLRPVVYCKADAALLCLSCDAKVHSANALSNRHPRTLLCESCKCRPTSLRCLDHRVFLCRNCDRSLHEVSSQHHRRAIRSYVGCPSAKDFVALWGFELNEMETVAPRDQFVSTSCGPLEQGVRNSSFSRHSCQQDGVSSLAFELNSSISIFGAESEVGSSTQQSKAFYNGQGQQKTSVILQQILDLKRLQLTDRKNTSSLIRGQEQIDISSSKFSTSQRLDDDLDEHSQNSLGICSDLQQMDSPKQELKVEPFPSPFSQLEQLSSSSTVGIPLHGDPFWQCKSPIQSSQLWSQNMQDLGVCEDVNCFDDFNIPDVDLTFQNFEELFGGDQDPTRLPVDIEDVTYSSLE* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0409 357 SMART bboxneu5 48 87 IPR000315 GO:0008270
Vvi1g0409 357 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vvi1g0409 357 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi1g0409 357 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Vvi1g0409 357 CDD Bbox1_BBX-like 4 47 - -
Vvi1g0409 357 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 255 - -
Vvi1g0409 357 CDD Bbox1_BBX-like 47 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0409 Vvi-Chr1 3849985 3854088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0409 1 341 C2C2-CO-like Transcription Factor Family AT1G68190 39.244 7.24e-68 216