Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0407 ATGGAAGAGAATTGGGATCCGTTAGCCCGCAGAATTCCCAGCTTTGGTCGTGGCCTACGGATCCTTCTGGTGGATCATGACACTACTTCTCTCATGTACATATCTTCAATGCTGGAATCCCATTCCTTCAAGGTGATGTCCTCCAGGTATCCTGGCAAGATAGTTGCAGAGCAAGCCCTGAGAAATGGGGCATGTTTCTTTCTTCAGAAACCTGTTTCTGACAATGATCTGAGAGACTTATGGCAACATGTGTATCGGAAGAGAAGGTCTTCGGAATTTCCAAAAGAGAGGAGTAAATCTCAAGGTGTGAAGATCAAAGAAGAATCCGCTAGTGCGTTTAGAAATGATTGGTTTAGGGAGGTGGGTAGTGTGTCCAGGACCAACTCTAGGACTGCCAATGAAAATGATTTGCATGGCACTAATCATGAACAGTGGATAGCTGATCTAAAAGGGAAGAATAAGCAAATCAAACCGGACAGTGGCCTAGTTAAGGGGGATGCACAAACTACTGAACGTGAACTGTTGAGGATGGCAGCTGACCAAAAACCAGGATGCAATGATAGAAAGAGATCAAATGAAGACAACACAGAAAAAAGAAAGTGCAAAAGGAAAATCTACTCTGAACAAATTCATTCCCAAGGTATAAGCCCCATTGAAGAAGACGGGAATGAAAAGAAACAGAAGAGTAGCACCTTGGAGAAAAGGCAATGTATGAGGTGGACTCCAGATCTTCACTTCAAATTTACAGAAGCCATCAGAAAACTGGGTGAAAAAAAGGCTAGCCCAAAAGCAATACTAGAGTTGATGAAGGTGCCGGATTTGAGACAAGGCCATATTTCCAGCCATCTGCAGAAATACAAAGCACAAGTTCAGAGCATGTTGGACACCTGTGGGAATACTCCACTGCCACTTCCATCTTCTGTGAATATATCAACATCCAATGGCAATCGCCAAATGGGAGTTCCACAATTCCAGGAGCGGCAGGGCTCTGTTGGAGTTAACGCTAATTCATCATTGCAGCTTCATCCTCCACTCTCTCTGAAGGCTAGTCCTGTACCAGGAAATGCAGGGCCTAGCAACTCAACTGAGCACAAGCAGCATCCAAATCCAACCAAAAACAACAATGGAGTTCAAATGGTGGGTTATGGAAAGCATCAAGGGACAAGCCAAATAAGGGAGAGGACAGGACCTTTTCCAAGTGATGTCAACATGAATGAGAATGGAAAGGGGAAACAGCCTCTGGGATTCCAAGGGAACAGTGATCCATATGTGGCACTAGATCAGGCTGCTCTTCATAGATTGACTGCTCAGCAGTGTTGGCAAAGTCTAACCCAGTTTCCAACACCATTTAAGAGGTTAACTGAGGCGCAAAATTTGGTGCCTAGGCTGACTTCTTCTGCCGGTAGACCCAACTCAGACATTCCTGATGGCATTAATACTACTGATGATGCTATACCACGACTGGCTCATCTAGCCAATTCAGCAAATCAGAGCGTTGCCCATGCCCCAGGTACAGGCCATGGTGGATTGGATGAGAGCGGTTATGATTGGTTGACTGAATGGTTAAGCAGATCTCTAGATGAAGATAATCCAGATGCTCGTAACTTCGATGGGCCAGACAAGTAA 1626 0.4502 MEENWDPLARRIPSFGRGLRILLVDHDTTSLMYISSMLESHSFKVMSSRYPGKIVAEQALRNGACFFLQKPVSDNDLRDLWQHVYRKRRSSEFPKERSKSQGVKIKEESASAFRNDWFREVGSVSRTNSRTANENDLHGTNHEQWIADLKGKNKQIKPDSGLVKGDAQTTERELLRMAADQKPGCNDRKRSNEDNTEKRKCKRKIYSEQIHSQGISPIEEDGNEKKQKSSTLEKRQCMRWTPDLHFKFTEAIRKLGEKKASPKAILELMKVPDLRQGHISSHLQKYKAQVQSMLDTCGNTPLPLPSSVNISTSNGNRQMGVPQFQERQGSVGVNANSSLQLHPPLSLKASPVPGNAGPSNSTEHKQHPNPTKNNNGVQMVGYGKHQGTSQIRERTGPFPSDVNMNENGKGKQPLGFQGNSDPYVALDQAALHRLTAQQCWQSLTQFPTPFKRLTEAQNLVPRLTSSAGRPNSDIPDGINTTDDAIPRLAHLANSANQSVAHAPGTGHGGLDESGYDWLTEWLSRSLDEDNPDARNFDGPDK* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0407 541 MobiDBLite consensus disorder prediction 218 233 - -
Vvi1g0407 541 MobiDBLite consensus disorder prediction 180 233 - -
Vvi1g0407 541 Gene3D - 45 185 - -
Vvi1g0407 541 MobiDBLite consensus disorder prediction 335 420 - -
Vvi1g0407 541 Gene3D - 231 293 - -
Vvi1g0407 541 SUPERFAMILY Homeodomain-like 234 292 IPR009057 -
Vvi1g0407 541 MobiDBLite consensus disorder prediction 180 207 - -
Vvi1g0407 541 FunFam Two-component response regulator 231 294 - -
Vvi1g0407 541 SUPERFAMILY CheY-like 17 91 IPR011006 -
Vvi1g0407 541 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 69 418 IPR044841 GO:0003700|GO:0006355
Vvi1g0407 541 MobiDBLite consensus disorder prediction 353 414 - -
Vvi1g0407 541 NCBIfam myb-like DNA-binding domain, SHAQKYF class 237 288 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0407 Vvi-Chr1 3833982 3836659 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0407 12 293 Response Regulator Gene Family AT1G68210 24.773 3.53e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi1g0407 None None None