Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0404 ATGGAAGAGAACCGGGATCCACTAGCTCGGAGAGTCCCAAGCTTTGCGCAGGGGAAGCGGATTCTTCTGGTGGATCGTGATGCTTCATCACTGACGTACATCTCTTCTGTACTGGAGTCTCATTCATACAAGGTAACAACCATAGAACTAGAATCTGTTGCCATGTCCATGTTTGCGGAGAACAAGGATGAATTTGATGCGGTTATGGTTGACATGAATATGAAGGATATGACAAGCCTCGAATTTGTCAGACGAATACTTCTTACAAAGAATTACACGCCCATCATTTTGATGTCCTCCATGGGTAACGAGGCTGTTGTAAGTCAAGCCCTAATTGACGGGGCGTGTCACTTTCTTGAGAAACCAATTCCTAACGATCAACTGCTGCAAATATGGCAACATGTGCATCGGGTGAAGAAGCTCTCAGAAGTGGAACAAGATGTGGGTAGAGGATCCAGCACTGGGATAGGTGAGGGTGCTACGATCAAAGAGAAGGGTGAGAAGGGTATTGCACATACAAATGATACATCTCAAGAGGGTACTGCCTCCAGGACTAAGAGATGTACAGACATTCAGATCAGAGAGGAGGGCAATGACTGTAGACCTGCCACTGGAGTTGAGTTGCAGGGGATTGATCCAAAAGGGAAGAACAAGAAAGTAGAAGGGGAAGTTGGCCTGGTTGGTCTGGAGACGCGCGATTTCAAACTACCTATAGGACTAACCATGGATGGCATAGATCAATTGAGGATGGAAGCTAAAGAAAAACGAGGATGCAGCAAGAGAAAGAGACCCAGTATTGATGATGGAGAAAAAGGAAAGTACCAGAGAAATGAGTGCTCTGAAAACTCTCATTCCAAGGGTAAAAGCCCCAGTGGAGAGGTTGGGAGTGAACGCAACCTCAATAGTTGCACTTCTGAGGCAAAACAATCTACATGTAGGACTACAGATCTTACAATAAAGTTAACATCATCCATTCGTGAACTTGGCGAAGAATGGGCTAATCCAAAAGCAATACAAGATACTATGAACGGGCCCAATCTGACCCAATGCCAGATTTCAAGCCATCTGCAGAGACACAAAAGTAATAAAACCCAAGTTCAGAGCATGTCAGACAGCCGTGAGGATGCCACAACACCACTTCTGTCCTCTGGGAATGCAACAGCTTTCAATATCAGTAGCAGGACAGGAGCTTCTCAATCCCAGGAGCAGCAAGGCTTAGTTGGAATTGAGGCTAAATTCTCATTGGAATTGAAAATGGGCGATGGCAGGCGACCAGGGTCAAGCCAAATAAGCGAGAGGGAACCCTTTCCCGGCGAAAAAGGAAAGGCTCCTCCTCAAAATTTTCCTACCAAGTATGGTTGGCAAAACCCAATCCCATTCAATAGCTCGAGTCACAGGCAAAACTTGGTCCCAGGGACGAATTCTTTTGCCTATGCACCCAATACAAATGTTCCTACAGGCACTATTACAGGGGAAGCTATGCCACCACTGGCTCATGGCGCCAGATCAGCAAATCCTGCTATAGCCAATGACCTCAGGACAGGCCACGTTTCATCAGATGAAGTTACAACCATTGAACTCTCCTCTATTGCAATGTCCATATACGCGGAGCGGAAGGACGAATTTGATGTGGTTATGGCAAATGTACACCTGCATAATATAACCGACCTTGAGTTTGTCCAAGAAATACTCAAGAAGAATAACACGCCCATCATCTTGATGTCCTCTGCGGGTGTCATGGCTCTTCGGGATCAAGCCCCACTTGTAGGGGCATGTCACTTCTATGAGAAACCCGTTTCTAGCAGCCAACTCAGAGAAGTATGGCAGCACGTGTATAGGGAGAGGCTATCGAAAGAAGAAGGCCGAGGAAAAAAGGTCAATAATGGGAATGAAACTGAACGTGTGAAGAAGGTAGAGGTGCCCGTGACCAGGAAATGTGTAGGCATTCAGATCAGAGAGGGGGGCACCGGCTCAAGTACTCCCCATAGAAATGAATTCCAGGCCAGCGATCCGAAGGATAAGAACAAGCAAGTCGTAGGGGAAGTTGGTTCAGGCCATCATGGGGATGCACAAGCTACAGAAACTGAACAATTGAGGACAATGGCAGCTGACCAAAACCAAAGATGCGGGGAGAGAAAGAGAGCCAACGATGATGATGATGACAAGGGAGGAAGAAGGAAGAACAAAAGGAGAATCAACCGTAAACATTCGCCTTCCAAGGCTGGGAGAGAAAAGAACCAAAATTATAGGTCCTCTGAGAAAAAGCAATCCATGCGGTGGACTAGAGAGCTTCATTTCAAGTTCATAGCAGCCATCAAGGCCAACCCAAAAGCAATACGGGACTTGATGAATGTTCCTAATTTGAGCCTACGCCAGATTGGTCACCAGCTGGAGAAATACAAAGCTCAAGTCCAGATCATCATGGACACATGCGTCGATACTCCACTATGGGCTCCATGGTCTCGGAATGCATCAACGGCCAATGTTGGTGGCACAACAGGCGTTCCACAACTACAGAAGCAGCAGGGTGGTTTGGTTAGAACTGAAACTAATCCACCATTGCAGCTATTTCCCCCTGTCTCCCTGCAGCCTGGTTCTCTGAACCTCAAAATTCCCAACAATAGAATTAGACCAGGACATTTGGGACCTAACGGCTCAGGTCATGGAAGGCATCAAGGATCAATCCAAATAAGGGAGAGGGAACCTCTTCCAACTCCTTTCATGACGAACGACAAGGGAAAAGGGAAACAGGCTCTGGGTTTCCAAGGCTATAGTACTGCTCCATATGTGCCTCCAGTGCACCATTGGCAAAATCCAACCCGGCCTCCAACATTTACCAGATTATCTGAGGAGCAACATTTGATGGCAGGGGCGAGTTCCTCTGCGAATCCACCCAATTCAAACGTTCCTGCTGGCACTAGTTCTACTCTTGCCAGTGCTTCAGCAAATCAAAATATCCCTGGTGGACCACTTGCAGGTCATGGTGGATTCGATGAGAGCGATGATCTGGCTTGGTTGACTGAATGGCTCAGTAGATCTCTGAAGGAAGATGATACAGGTCCTCCAACTTTTGATTGGTCGGACATGTAA 3090 0.4699 MEENRDPLARRVPSFAQGKRILLVDRDASSLTYISSVLESHSYKVTTIELESVAMSMFAENKDEFDAVMVDMNMKDMTSLEFVRRILLTKNYTPIILMSSMGNEAVVSQALIDGACHFLEKPIPNDQLLQIWQHVHRVKKLSEVEQDVGRGSSTGIGEGATIKEKGEKGIAHTNDTSQEGTASRTKRCTDIQIREEGNDCRPATGVELQGIDPKGKNKKVEGEVGLVGLETRDFKLPIGLTMDGIDQLRMEAKEKRGCSKRKRPSIDDGEKGKYQRNECSENSHSKGKSPSGEVGSERNLNSCTSEAKQSTCRTTDLTIKLTSSIRELGEEWANPKAIQDTMNGPNLTQCQISSHLQRHKSNKTQVQSMSDSREDATTPLLSSGNATAFNISSRTGASQSQEQQGLVGIEAKFSLELKMGDGRRPGSSQISEREPFPGEKGKAPPQNFPTKYGWQNPIPFNSSSHRQNLVPGTNSFAYAPNTNVPTGTITGEAMPPLAHGARSANPAIANDLRTGHVSSDEVTTIELSSIAMSIYAERKDEFDVVMANVHLHNITDLEFVQEILKKNNTPIILMSSAGVMALRDQAPLVGACHFYEKPVSSSQLREVWQHVYRERLSKEEGRGKKVNNGNETERVKKVEVPVTRKCVGIQIREGGTGSSTPHRNEFQASDPKDKNKQVVGEVGSGHHGDAQATETEQLRTMAADQNQRCGERKRANDDDDDKGGRRKNKRRINRKHSPSKAGREKNQNYRSSEKKQSMRWTRELHFKFIAAIKANPKAIRDLMNVPNLSLRQIGHQLEKYKAQVQIIMDTCVDTPLWAPWSRNASTANVGGTTGVPQLQKQQGGLVRTETNPPLQLFPPVSLQPGSLNLKIPNNRIRPGHLGPNGSGHGRHQGSIQIREREPLPTPFMTNDKGKGKQALGFQGYSTAPYVPPVHHWQNPTRPPTFTRLSEEQHLMAGASSSANPPNSNVPAGTSSTLASASANQNIPGGPLAGHGGFDESDDLAWLTEWLSRSLKEDDTGPPTFDWSDM* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0404 1029 SUPERFAMILY Homeodomain-like 754 802 IPR009057 -
Vvi1g0404 1029 ProSiteProfiles Response regulatory domain profile. 498 612 IPR001789 GO:0000160
Vvi1g0404 1029 SUPERFAMILY CheY-like 17 140 IPR011006 -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 690 704 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 666 680 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 355 383 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 284 307 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 954 998 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 954 986 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 253 307 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 419 444 - -
Vvi1g0404 1029 SUPERFAMILY CheY-like 534 619 IPR011006 -
Vvi1g0404 1029 ProSiteProfiles Response regulatory domain profile. 20 136 IPR001789 GO:0000160
Vvi1g0404 1029 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 374 IPR045279 GO:0009736
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 253 283 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 649 757 - -
Vvi1g0404 1029 SMART REC_2 19 132 IPR001789 GO:0000160
Vvi1g0404 1029 SMART REC_2 504 608 IPR001789 GO:0000160
Vvi1g0404 1029 Pfam Response regulator receiver domain 21 131 IPR001789 GO:0000160
Vvi1g0404 1029 Gene3D - 17 150 - -
Vvi1g0404 1029 Gene3D - 510 631 - -
Vvi1g0404 1029 Gene3D - 304 366 - -
Vvi1g0404 1029 Gene3D - 751 806 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 706 726 - -
Vvi1g0404 1029 NCBIfam myb-like DNA-binding domain, SHAQKYF class 310 359 IPR006447 GO:0003677
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 739 757 - -
Vvi1g0404 1029 MobiDBLite consensus disorder prediction 149 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0404 Vvi-Chr1 3806860 3815280 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0404 703 807 Response Regulator Gene Family AT2G25180 30.631 1.99e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi1g0404 Response_reg 2.3e-15 CL0304