Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0401 ATGGAAGCACCAGTAGTTCTGCATATTTCTGATGACAGTATAACAATACTTCAAATGGGCACAATAAGGGAGGTTGAACCTGGTTGTCACACTATCAAATCTCATGGACTCCAAGTTGCAAAAGATCACAAGCATGATTGGCTTATATTGCTGCTTCTTGTAATGATAGCGATCATTCTACTTGTCATTCATCCATTTTACCGCTTTGTGGGAAAAGATATGATGGATGACCTTAAATATCCTTTGAAAGATAACACAGTACCTGTGTGGGCTATTCCAATCTATGCTGTTCTGTTGCCGATTGTCATTTTTATTCTATTCTATCTTCGTAGGAGGGATGTATATGATCTGCACCACAGCATACTAGGCCTCTTTTTTTCTATGCTGATCACTGCGGTTATTACGGAAGCAATAAAAGATGCAGTTGGACGGCCTCGGCCAGACTTCTTTTGGCGCTGCTTTCCTGATGGAAAAGATGTGTATGATCAGTGGGGAGATGTTATATGCCATGGAAAGGATAGCGTTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGTGGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTCAAGCATTTGACCGCAAAGGGCATGTTGCAAAACTATGCATTGTTTTCCTCCCTCTACTTGCTGCATCTCTTGTTGGAGTTTCTCGGGTGGATGACTATTGGCACCATTGGCAAGATGTGTTTGCTGGAGGTCTTCTAGGGCTTGTTGTTGCATTTTTTTGCTATCTGCAGTTCTTTCCTCCTCCATATGATAATAATGGATCGGGCCCCTATGCATACTTCAAAATGTTAGAGGGGTTGAGGGCCAACAGACAAGCAGCCGATTCTGTGAATGTGCAAGATGCGCAAGGAATGGAGGTTGTTTTACCTCAGCAACCTTCACGAAACAACAACGGGTTTATGCCATTATCTCTTGACCATGATGCTACTGATTCTTTGGATCAAATGGAAGCTGGGAGGAGGTTCAGAGCAGTATGTTCGTCATGGGGCTTGGTTGCTTCCTTTGCAAGATCTCAACTCCTCAAGCCTCTCAGTCCAACGCTGCTATTGCCTTCTAACAAAGATGATGAAGTTCACCACCTCTTTGACTTCTCCGAGAACAAGGCTCTTAGGATTCCACTCCCGGAGGTTTACGAGTTCTTTAATCCTATGTCGAGGGCACAAATCCAGTTGCCTCTCCCAGAGACGTTTCAAGATCCTCCAGCTGATGTAGGTGATGCACCAATTAAGAGCTTCATATACAAAGCCATACCTTCTTCAACTCCTTTAGATCCCAATTGTGTTACCATGAAGAAAGTTGGCATTCTGAACGGAAAAGAAGAGACAATAAGAGAAAGCTTGGAATCTCACCACTATACTTTCAGCTTGAGCATGTTAGCGGATTCGAAGTTTTCTTTTTCTGTTCCTATGCTTCCTCCGGATCGAGCAGAGTATAAAGGAGATACAGGCTCGAAGAAGCCCTAG 1521 0.4366 MEAPVVLHISDDSITILQMGTIREVEPGCHTIKSHGLQVAKDHKHDWLILLLLVMIAIILLVIHPFYRFVGKDMMDDLKYPLKDNTVPVWAIPIYAVLLPIVIFILFYLRRRDVYDLHHSILGLFFSMLITAVITEAIKDAVGRPRPDFFWRCFPDGKDVYDQWGDVICHGKDSVIREGHKSFPSGHTSWSFAGLGFLSLYLSGKIQAFDRKGHVAKLCIVFLPLLAASLVGVSRVDDYWHHWQDVFAGGLLGLVVAFFCYLQFFPPPYDNNGSGPYAYFKMLEGLRANRQAADSVNVQDAQGMEVVLPQQPSRNNNGFMPLSLDHDATDSLDQMEAGRRFRAVCSSWGLVASFARSQLLKPLSPTLLLPSNKDDEVHHLFDFSENKALRIPLPEVYEFFNPMSRAQIQLPLPETFQDPPADVGDAPIKSFIYKAIPSSTPLDPNCVTMKKVGILNGKEETIRESLESHHYTFSLSMLADSKFSFSVPMLPPDRAEYKGDTGSKKP* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0401 506 Gene3D Phosphatidic acid phosphatase type 2/haloperoxidase 42 274 - -
Vvi1g0401 506 CDD PAP2_containing_1_like 78 264 - -
Vvi1g0401 506 SUPERFAMILY Acid phosphatase/Vanadium-dependent haloperoxidase 42 269 IPR036938 -
Vvi1g0401 506 PANTHER LIPID PHOSPHATE PHOSPHATASE 32 299 IPR043216 GO:0006644
Vvi1g0401 506 Pfam PAP2 superfamily 122 265 IPR000326 -
Vvi1g0401 506 SMART acid_phosph_2 120 261 IPR000326 -
Vvi1g0401 506 FunFam Lipid phosphate phosphatase 2 41 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0401 Vvi-Chr1 3786769 3797082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0401 22 339 Lipid Metabolism Gene Families AT3G02600 66.154 3.79e-158 450