Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0399 ATGGAGGCGCCACCCGTAGTACCACCAGCGCCGCCACTATCCAGCGGCCTCGGTGTAGGTGTTGGAGGGCCCCACATGAGCTACCCCGATTCGGTGGACTCCTCGCCGCGGTCCCGCAACACCGACTCCTGGGACGACCCTTTGCCGTCCGTTCCGGGAGCAAAGCTGCGGCTGATGTGTAGCTACGGCGGACACATATTTCCCCGGCCGCACGACAAGTCGCTCTGCTACGTCGGAGGTGATACTCGGATCGTGGTCGCCGATCGGAACTCTAGCCTAGCCGACCTCTCCGCCCGACTCTCGAAGATACTTCTCCAGGGCCGTTCTTTCACCCTCAAGTACCAGCTTCCAAACGAGGACCTTGATTCCCTCATCTCCGTCACCACCGATGAAGACCTCGAAAACATGATCGATGAGTACGATCGAACCTCCGCCCTTAAACCTTCTCGACTCCGTCTCTTCCTCTTTCCGAACAAGCCGGAGTCGGCGTCGTCGATCGGATCCATTCTGGACAATTCAACCAAGTCGGACGATTGGTTTCTCAATTGCCTCAATGGTACTAATCTTATGACCAGAGGGTTCTCGGATTCTGCGTCGGTGAATTGCTTGTTGAGTCTGGATGAAGATGCTGTCGCGAATAATCTGGATTCTTCGTCAGCGAGAGACTTGGAGGCTTCTCAGCCAGGAGGTTTTGGTACTTGCAAGACTGTTAAGCAGGGGCAGGATGTTCATTCGGTGCCTGATTCGCCGATGTTGGAGACGTCTTCATCGTTTGGGTCCACTTCATCTTCGCCCTCGCTGGCAAACTTGCCGCCGATAAGGGTTCATGTGGAGGATGGTAGTGGAGGTGGTAGCGTTAGGTTGCAGGATCAGAAGTTGGGGATTGAGGAACAGTTCGCCCAGATGAGTGTTGCTATGCAGAAGCAAGATGAGGGTTTTGTTGTTCTGTCTTCTCCAGCTACTGCCGGGGCCGCTGTGCCTGTCATGGCCGGTGGCGACTACCCTAATCGGGTTTTCTCCGATGATGAGAGATCAGATCAAGGGATGCCGGTGGGTTACCGGAAACCTCCACCGCCGCAGCCGCAGCAACAGCCTCTGCCCCCACAATCACAGCAGAAATCAGTTGGTGGCATTGATTTGGCCTCCCCAGATTCAGTTTCAAGTGACAATAGTATTCCAAATGCAATATCTCGCCCCAAACCCATGATTTATCAAGAACCAGTCATTCAAATTCCTTCTGGAACCAATAGGGTTTCTTCTAACCCTGTTGAGCAAAATATTAATCTCTTTGATCCAAACTCCCGGATTCATATGCAACAACCTGTTCAGGATTCTGGCTATATATTAGCACCCCAATTTGATCAGCAGCAGCAGCAACAGCAACAGCAACAGCACCAGCAACAGCAACAGCACCAGCAACAGCAACAGCAACAACCCCAACCACAGCCACAATTCATTCATGCTGGCACACATTACATCCACCACCATCCCACAGGGCCACTACAAGTCCCCTCCTTCTACCCAGTGTATCCTTCCCAGCAGCAACACCATCACCACCACCCTCACCAGCTTGATCCACAGTACCCCATGTACTTTGTGCCCTCCAGGCAGGCCCAAGCCTACAGCTTGTCTATGCAGCAATCTAATTTCAGTGAAGCTGCCACTGGAATTCCATCTGGCCGATCCCAAGCACCTTCTGCTCCTGCCATGGTCACTTCTCCTGCAGCTTACAACCCCACAAGGAATGCTCCTCTTCAGAAGCCTGAAATGGCTGCAGGCATGTACAGAACAGGAACTGCAGCCGCTCCATTGGTTCAAGTGCCCTCTAGTCAGCATCAGCAGCAATATGTTGGTTACTCTCAGATCCATCACCCATCACAGTCTATTGCCCCTCCTTCTGCTGCTACTGCAAATTATGCTTATGAATTTTCTGATCCGGCTCATGCCCAGATATTCTATGCTCAGGCTATGGCACCCACATTACCTCAATACCAGACCATGACATCAGCTCCTGCAGTGGTGGTACCAGAAGCATCTGCTCAGCTTTCCACCGACAACATCAAGCAGCAGATCAGAACTTCTCAGCCATTGTAG 2094 0.5258 MEAPPVVPPAPPLSSGLGVGVGGPHMSYPDSVDSSPRSRNTDSWDDPLPSVPGAKLRLMCSYGGHIFPRPHDKSLCYVGGDTRIVVADRNSSLADLSARLSKILLQGRSFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTSALKPSRLRLFLFPNKPESASSIGSILDNSTKSDDWFLNCLNGTNLMTRGFSDSASVNCLLSLDEDAVANNLDSSSARDLEASQPGGFGTCKTVKQGQDVHSVPDSPMLETSSSFGSTSSSPSLANLPPIRVHVEDGSGGGSVRLQDQKLGIEEQFAQMSVAMQKQDEGFVVLSSPATAGAAVPVMAGGDYPNRVFSDDERSDQGMPVGYRKPPPPQPQQQPLPPQSQQKSVGGIDLASPDSVSSDNSIPNAISRPKPMIYQEPVIQIPSGTNRVSSNPVEQNINLFDPNSRIHMQQPVQDSGYILAPQFDQQQQQQQQQQHQQQQQHQQQQQQQPQPQPQFIHAGTHYIHHHPTGPLQVPSFYPVYPSQQQHHHHHPHQLDPQYPMYFVPSRQAQAYSLSMQQSNFSEAATGIPSGRSQAPSAPAMVTSPAAYNPTRNAPLQKPEMAAGMYRTGTAAAPLVQVPSSQHQQQYVGYSQIHHPSQSIAPPSAATANYAYEFSDPAHAQIFYAQAMAPTLPQYQTMTSAPAVVVPEASAQLSTDNIKQQIRTSQPL* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0399 697 MobiDBLite consensus disorder prediction 453 485 - -
Vvi1g0399 697 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 75 158 - -
Vvi1g0399 697 MobiDBLite consensus disorder prediction 453 527 - -
Vvi1g0399 697 MobiDBLite consensus disorder prediction 232 269 - -
Vvi1g0399 697 SUPERFAMILY CAD & PB1 domains 71 166 - -
Vvi1g0399 697 Pfam PB1 domain 71 157 IPR000270 GO:0005515
Vvi1g0399 697 MobiDBLite consensus disorder prediction 367 395 - -
Vvi1g0399 697 PANTHER OS05G0427100 PROTEIN-RELATED 27 517 - -
Vvi1g0399 697 MobiDBLite consensus disorder prediction 352 366 - -
Vvi1g0399 697 CDD PB1_UP2 59 156 - -
Vvi1g0399 697 Coils Coil 457 477 - -
Vvi1g0399 697 MobiDBLite consensus disorder prediction 218 287 - -
Vvi1g0399 697 MobiDBLite consensus disorder prediction 31 45 - -
Vvi1g0399 697 MobiDBLite consensus disorder prediction 1 48 - -
Vvi1g0399 697 SMART PB1_new 70 158 IPR000270 GO:0005515
Vvi1g0399 697 MobiDBLite consensus disorder prediction 326 399 - -
Vvi1g0399 697 ProSiteProfiles PB1 domain profile. 55 158 IPR000270 GO:0005515
Vvi1g0399 697 Gene3D - 75 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0399 Vvi-Chr1 3757505 3759753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0399 54 225 MAP Kinase Kinase Kinase AT1G79570 36.994 7.42e-26 112