Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0398 | ATGTCTGTTGATGGGATTGGAGTGGAGAGAGTGTTTATAGGAGCGGGATGCAACAGAATAGTAAACAACGTCTCTTGGGGCGCTTGTGATTTAGTCGCTTTTGGTGCCGAAAACGGCGTCGCTATATTCTGCCCTAAGGCAGCTCAGATTTTGACTACACTTCCAGGTCACAAGGCTTCTGTCAACTGCACCCATTGGATTCCAAGTTCTAAATTTGCGTTCAAAGAAAAACAGCTAGAGCGGCATTATCTGTTATCTGGTGATGCAGATGGTGTTATTCTGTTATGGGAATTATCTCTTGCAGACAAAAAGTGGAGGCATGTGTTACAAGTACCACAACCACATAAGAAGGGTGTTACTTGCATTACTGGAATTATGGTTTCTGAAACTGATGTGATATTTGCATCTACCTCTTCAGATGGAACAATAAATGTGTGGGAACTGATCCTTCCATCCACTATTGGAGGTGACTGCAAATTGTCATTTCTGGAATCTATTTTTGTTGGTTCAAAATCCATGGTGGCACTTTCATTATCAGAATTACCTGGAAATACTGGGCATGTAGTCCTGGCAGCTGGGGGCTTAGATAATAAAGTTCATCTTTATTGCGGGGAGAGGACAGGAAAGTTTGTTCATGCTTGTGAGTTAAAAGGGCATACAGATTGGATCCGGAGTTTGGACTTCTCCTTGCCTATATGCACCAATGATGGAACAAGCAGTCTTTTACTTGTAAGTTCATCTCAGGACAGAGGCATACGCATATGGAAGATGGCTTCATGTAGTTCTCAATCCAATTCTAAGGGTACATTTAGGGAGGAAAAGATAAGCTTGGCATCTTATATTGAAGGTCCTGTACTTGTTGCTGGCTCATCCTCGTATCAGATATCTCTGGAATCTCTTCTTATTGGACACGAGGATTGGGTTTATTCAGTGGAGTGGCAACCCCCTTCAGTCACATCTGCAAATGGGTTTGCCTACTATCAACCACAAAGCATCTTATCTGCATCTATGGACAAGACAATGATGATCTGGCAACCTGAAAGGACTACTGGTATCTGGATGAATGTGGTCACTGTTGGGGAATTAAGTCATTGTGCTTTAGGGTTCTATGGTGGCCATTGGAGCCCAAATGGAGATTCAATTTTGGCTCATGGTTACGGTGGATCTTTCCATCTCTGGAAAAATGTTGGTATCGAATATGACAATTGGCAACCACAAAAAGTTCCCTCTGGGCACTATGCAGCAGTGACTGATATTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCGATTGTTGGCATGAAATTGCTCGCCCTCAAGTTCATGGTCATGACATTAACTGTGTGACAATCATCCATGGAAAAGGGAACCATCGGTTTGTTAGTGGAGCTGATGAGAAGGTTGCCAGAGTGTTTGAGGCTCCTCTGTCTTTTCTAAAGACATTAAATCATGCCATTTCACAAAAATCTAGTTTTCCTGAAGACTTTCAAGTCGATGTTCAGATTTTGGGTGCAAATATGTCAGCTTTGGGACTATCACAGAAACCTATTTATGTTCATTCCACACATGAGAGTCCAGAAAGAAATGTCAATGATGGCCTTGACACACTTGAAACCATTCCAGATGCAGTACCAGTTGTGTTAACTGAACCCCCCATTGAAGAAAAATTGGCATGGCATACACTCTGGCCAGAGTCGCACAAACTCTATGGTCACGGGAATGAGCTGTTTTCTTTGTGCTGTGACCAGGGAGGGAAGCTTGTTGCTTCATCATGTAAGGCTCAATCAGCGAAAGTTGCAGAAATATGGCTATGGCAAGTGGGTTCATGGAAGGCAGTTGGTCGCTTGCAATCTCACAGCTTAACAGTGACACAGATTGAATTTTCTCATGATGACAATCTGCTTTTGTCTGTCTCCAGGGATCGCCAGTTTTCTGTTTTTGCAATAAAAAGAACAGGTGTGGACGAAGTCAGTCACCAGCTTATAGCAAGGCAGGAGGCACACAAAAGAATAATATGGGCATGCTCTTGGAACCCATTTGGTCATGAATTTGCAACAGGTTCAAGGGACAAAACTGTGAAGATCTGGGCTGTAGACAAGGGATCTTCAGTTAAGCAGCTCATGACTTTGCCACAGTTCACCAGTAGTGTCACCGCCTTATCTTGGTTTGCTCTTGATCATCAGAGAAACGATGGGTTTCTTGCTGTTGGAATGGAAAGTGGACTCGTTGAATTGTGGAGCCTTTCGGTGACCAGAACCGTAGATGGTAGCATGACAGTACCAGGTGTAACTGCTGCTCTTGTTAGACGGTTGGATCCATTTATGTGCCATGTTTCCTCTGTGCAGCGTTTAGCATGGAGGAAGTCTGAGGCAAGTGGAGATTGCAAAAGCGTACTGCTTGCTTCTTGTGGAGCTGATCATTGTGTGAGAATTTTTGAGGTCAATGTTGCGTAA | 2520 | 0.4357 | MSVDGIGVERVFIGAGCNRIVNNVSWGACDLVAFGAENGVAIFCPKAAQILTTLPGHKASVNCTHWIPSSKFAFKEKQLERHYLLSGDADGVILLWELSLADKKWRHVLQVPQPHKKGVTCITGIMVSETDVIFASTSSDGTINVWELILPSTIGGDCKLSFLESIFVGSKSMVALSLSELPGNTGHVVLAAGGLDNKVHLYCGERTGKFVHACELKGHTDWIRSLDFSLPICTNDGTSSLLLVSSSQDRGIRIWKMASCSSQSNSKGTFREEKISLASYIEGPVLVAGSSSYQISLESLLIGHEDWVYSVEWQPPSVTSANGFAYYQPQSILSASMDKTMMIWQPERTTGIWMNVVTVGELSHCALGFYGGHWSPNGDSILAHGYGGSFHLWKNVGIEYDNWQPQKVPSGHYAAVTDIAWARSGEYLLSVSADQTTRIFASWQNEASFGGSDCWHEIARPQVHGHDINCVTIIHGKGNHRFVSGADEKVARVFEAPLSFLKTLNHAISQKSSFPEDFQVDVQILGANMSALGLSQKPIYVHSTHESPERNVNDGLDTLETIPDAVPVVLTEPPIEEKLAWHTLWPESHKLYGHGNELFSLCCDQGGKLVASSCKAQSAKVAEIWLWQVGSWKAVGRLQSHSLTVTQIEFSHDDNLLLSVSRDRQFSVFAIKRTGVDEVSHQLIARQEAHKRIIWACSWNPFGHEFATGSRDKTVKIWAVDKGSSVKQLMTLPQFTSSVTALSWFALDHQRNDGFLAVGMESGLVELWSLSVTRTVDGSMTVPGVTAALVRRLDPFMCHVSSVQRLAWRKSEASGDCKSVLLASCGADHCVRIFEVNVA* | 840 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0398 | 839 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 638 | 672 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SUPERFAMILY | WD40 repeat-like | 18 | 489 | IPR036322 | GO:0005515 | |
| Vvi1g0398 | 839 | Gene3D | - | 576 | 676 | IPR015943 | GO:0005515 | |
| Vvi1g0398 | 839 | Gene3D | - | 161 | 290 | IPR015943 | GO:0005515 | |
| Vvi1g0398 | 839 | PANTHER | ELONGATOR COMPLEX PROTEIN 2 | 9 | 838 | IPR037289 | GO:0002098|GO:0033588 | |
| Vvi1g0398 | 839 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 687 | 724 | - | - | |
| Vvi1g0398 | 839 | Gene3D | - | 677 | 839 | IPR015943 | GO:0005515 | |
| Vvi1g0398 | 839 | Gene3D | - | 404 | 513 | IPR015943 | GO:0005515 | |
| Vvi1g0398 | 839 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 216 | 265 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 409 | 440 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 102 | 147 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 786 | 835 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 584 | 623 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 451 | 495 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 680 | 719 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 47 | 97 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 207 | 256 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 725 | 769 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 631 | 670 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 294 | 345 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 355 | 394 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | SMART | WD40_4 | 402 | 441 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | Gene3D | - | 291 | 403 | IPR015943 | GO:0005515 | |
| Vvi1g0398 | 839 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 687 | 728 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | Pfam | WD domain, G-beta repeat | 110 | 146 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | Pfam | WD domain, G-beta repeat | 403 | 440 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | Pfam | WD domain, G-beta repeat | 215 | 256 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | Pfam | WD domain, G-beta repeat | 49 | 96 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | Pfam | WD domain, G-beta repeat | 688 | 718 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | Pfam | WD domain, G-beta repeat | 301 | 344 | IPR001680 | GO:0005515 | |
| Vvi1g0398 | 839 | FunFam | Elongator acetyltransferase complex subunit 2 | 364 | 676 | - | - | |
| Vvi1g0398 | 839 | SUPERFAMILY | WD40 repeat-like | 212 | 834 | IPR036322 | GO:0005515 | |
| Vvi1g0398 | 839 | Gene3D | - | 10 | 160 | IPR015943 | GO:0005515 | |
| Vvi1g0398 | 839 | PRINTS | G protein beta WD-40 repeat signature | 134 | 148 | IPR020472 | - | |
| Vvi1g0398 | 839 | PRINTS | G protein beta WD-40 repeat signature | 706 | 720 | IPR020472 | - | |
| Vvi1g0398 | 839 | PRINTS | G protein beta WD-40 repeat signature | 243 | 257 | IPR020472 | - |