Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0392 ATGGTTCCTTTGGTTTTGTTGGTGCTTCTTCTCTGCAACTCCCATGCTCTTGTGGGTTCTCTGAATGAGGAAGGCGTTGCACTTTTGTCGTTTAAGCGGTCCGTTGGAGAAGACCCAGAAAGGTCTTTGGATAACTGGAACTCTTCTGACGAGAACCCTTGTTCATGGAATGGTATTACATGCAAAGAGGAAAGAGTTGTGTCTGTTAGCATTCCGAAGAAGAAACTCCTTGGGTTTCTTCCTTCTGCTCTTGGATCTCTAACTCAACTCAGACATGTGAATTTGAGGAACAATAAGTTCTTTGGGAGCTTGCCTGTTGAGCTCTTTAAAGCACAAGGGCTACAAAGTCTGGTCCTTTATGGAAATAACTTGTCTGGGTCAGTGCCTTCTGAAATTGGGAGTCTCAAATACCTTCAGACCTTAGATTTATCGCAGAATTTTTTCAATGGGTCGTTACCCACGTCTCTGCTGCAGTGCAAGAGATTGAAAACTCTTGATCTCAGCCAAAACAATTTCACTGGTTCTCTGCCAGATGGGTTTGGGAAGGGGTTGATTTCTCTGGAAAAGCTCGATCTTTCTTTCAACAAATTCAGTGGTCCTATTCCTAGCGACATTGGAAATTTGTCTAATTTGCAAGGGACCGTTGATTTATCTCATAATATCTTCAGTGGTTCAATTCCAGCCAGCCTCGGGGACCTTCCTGAGAAGGTTTATATTGATCTCACTTATAACAATTTGAGCGGTCCAATACCCCAAAATGGTGCTCTAATGAACAGAGGACCAACAGCTTTTATCGGGAATCCTCGGCTCTGTGGCCCTCCTTCGAAGAATCCATGTTCTCCTGAAACAGCCAGTTCACCTTCCTCAATTCCTTTTTTGCCTAATAACTACCCGCCTCCGAATTCAGATGGTGATTCAGGGAAGGGGAAAGGAAGGGGTCTCAGTAAGAGTGCTGTAATTGGAATTGTAGTGGGCGATGTGGTAGGAATCTGCCTTATTGGGTTGCTTTTCTCTTATTGTTATTCGAGGATGTGTTCTTGTGGCAAGGGTAAGGATGAGAATGGTTATGGTTTTGAGAAGGGAGGGAAGGCCAGGAAGGAGTGTTTGTGCTTCAGGAAAGATGAGTCTGAAACCCTATCAGAAAATGTGGAGCAGTATGATCTTGTGCCGCTGGATACACAAGTGGCTTTTGACCTGGACGAGCTTCTGAAGGCATCTGCTTTTGTCTTAGGGAAGAGTGGAATTGGGATTGTGTACAAAGTTGTGCTTGAAGATGGAAGCACCTTAGCTGTGAGAAGATTAGGGGAAGGAGGTTCTCAGAGGTTTAAAGAATTTCAGACGGAAGTAGAAGCTATAGGAAAACTAAGGCATCCTAATATTGTCACTCTTAGAGCTTATTACTGGTCTGTCGATGAGAAGCTGCTCATCTATGATTACATACCAAACGGAAACCTTGCCACTGCAATTCATGGGAAGCCTGGAATGGTATCCTTTAGGCCTCTACCATGGTCTGTCCGGTTGAAAATCATGGAAGGAACTGCTAAAGGCTTGGTTTATCTGCATGAATTTAGTCCCAAAAAATATGTCCATGGAGATTTGAAGCCTAGTAATATACTGCTTGGGCAGAACATGGAACCCCACATCTCTGATTTTGGACTTGGGCGGCTAGCTAATATTGCTGGCGGATCCCCAACCCTGCAATCTAGTAGAATGACTTCTGAGAAACCCCCACAAAGACAACAAAGTAATCCACCCTCAGAAGTTGGTGCAGTTAGTTCAACTTCAAACTTGGGGTCCTATTATCAAGCTCCAGAGGCACTGAAAGTGGTGAAGCCCTCACAAAAGTGGGATGTTTACTCATATGGGGTGATTTTACTGGAAATGATTACTGGAAGATTGCCGGTAGTCCAAGTGGGTAGCTCAGAGATGGATCTGGTTCGCTGGATTCAGCTGTGCATTGAAGAGAAGAAGCCACTTGCGGATGTCCTAGACCCATATCTAGCTCAAGATGCAGACAAGGAAGAAGAGATGGTTGCAGTTCTAAAGATCGCAATGGCTTGTGTTCACAGCAGCCCTGAAAGGAGGCCAGCAATGAGACACGTCTCCGATATCTTGGACAGATTGGCCATGTCAACTGATTGA 2142 0.4468 MVPLVLLVLLLCNSHALVGSLNEEGVALLSFKRSVGEDPERSLDNWNSSDENPCSWNGITCKEERVVSVSIPKKKLLGFLPSALGSLTQLRHVNLRNNKFFGSLPVELFKAQGLQSLVLYGNNLSGSVPSEIGSLKYLQTLDLSQNFFNGSLPTSLLQCKRLKTLDLSQNNFTGSLPDGFGKGLISLEKLDLSFNKFSGPIPSDIGNLSNLQGTVDLSHNIFSGSIPASLGDLPEKVYIDLTYNNLSGPIPQNGALMNRGPTAFIGNPRLCGPPSKNPCSPETASSPSSIPFLPNNYPPPNSDGDSGKGKGRGLSKSAVIGIVVGDVVGICLIGLLFSYCYSRMCSCGKGKDENGYGFEKGGKARKECLCFRKDESETLSENVEQYDLVPLDTQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGSTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDYIPNGNLATAIHGKPGMVSFRPLPWSVRLKIMEGTAKGLVYLHEFSPKKYVHGDLKPSNILLGQNMEPHISDFGLGRLANIAGGSPTLQSSRMTSEKPPQRQQSNPPSEVGAVSSTSNLGSYYQAPEALKVVKPSQKWDVYSYGVILLEMITGRLPVVQVGSSEMDLVRWIQLCIEEKKPLADVLDPYLAQDADKEEEMVAVLKIAMACVHSSPERRPAMRHVSDILDRLAMSTD* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0392 713 MobiDBLite consensus disorder prediction 274 310 - -
Vvi1g0392 713 Gene3D Phosphorylase Kinase; domain 1 372 479 - -
Vvi1g0392 713 FunFam Leucine-rich repeat receptor-like protein kinase 387 479 - -
Vvi1g0392 713 ProSiteProfiles Protein kinase domain profile. 404 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0392 713 Gene3D Ribonuclease Inhibitor 15 75 IPR032675 -
Vvi1g0392 713 Gene3D Ribonuclease Inhibitor 76 283 IPR032675 -
Vvi1g0392 713 Pfam Leucine rich repeat 89 146 IPR001611 GO:0005515
Vvi1g0392 713 Pfam Leucine rich repeat 161 220 IPR001611 GO:0005515
Vvi1g0392 713 SMART LRR_typ_2 135 159 IPR003591 -
Vvi1g0392 713 SMART LRR_typ_2 160 182 IPR003591 -
Vvi1g0392 713 SMART LRR_typ_2 184 208 IPR003591 -
Vvi1g0392 713 SMART LRR_typ_2 87 111 IPR003591 -
Vvi1g0392 713 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 21 182 - -
Vvi1g0392 713 SMART serkin_6 409 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0392 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Vvi1g0392 713 Pfam Protein kinase domain 410 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0392 713 SUPERFAMILY Protein kinase-like (PK-like) 409 704 IPR011009 -
Vvi1g0392 713 FunFam Leucine-rich repeat protein kinase family protein 480 711 - -
Vvi1g0392 713 SUPERFAMILY L domain-like 23 274 - -
Vvi1g0392 713 PANTHER OS05G0588300 PROTEIN 158 706 - -
Vvi1g0392 713 MobiDBLite consensus disorder prediction 564 593 - -
Vvi1g0392 713 Gene3D Transferase(Phosphotransferase) domain 1 480 713 - -
Vvi1g0392 713 FunFam Leucine-rich repeat receptor-like protein kinase 186 281 - -
Vvi1g0392 713 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Vvi1g0392 713 CDD STKc_IRAK 410 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0392 Vvi-Chr1 3716262 3718522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0392 1 713 Receptor kinase-like Gene Family AT2G01210 70.932 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi1g0392 Pkinase 2e-32 CL0016