Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0389 ATGAGTGACATACCGCCCCAGTGGAATCAGAACGAAGCTTCTGAGGAGGATTTTTTCCTTGAGTCTCCTCTAATGGACGATGATACTTTAGATCTCCTTTCTGATCCCGATATTCTCCTCTCTGATTCTGATGATATCCCTCAAACCGGTTCTATGAGTACTCGGCAACCGAGAGAGGATTACTCTTTTTCTGATATTTATGGTGATTTGGAGGAAGTCCAGCCTCTGCTGGACACATCTTTACCTGTTCATGACATAAATAATAATGGATCTAATGGGTTGATTTTGTGTGGGGTATTTGAGAAGGGAGAATCAAGTGTGAGGCAAAGGGTTGAGCGACATGATAAAGAGTCTGGAAAAGTAACTGAGGTGGCTGCTGGATGGCGGGCGGACAAAGAGAAGGCCACAGTGAAAGAGGATGAGGACAGGCCTAAAAGAAGGCGTACGGCTGAGCAACATAGCGTGTACGAGAGGAAACGAAGGAGTAGGATACAGGAGAAGCTGAGAACTTTGCAGGAGATGGTCCCGAATGCTAGCAAATACGGATTCTTACGATTAGATGAACAGGAACTCTCCTTGTTTCGTCCAAGCATGGAGGAAAAAAAAAATGAAACTACAAAAATTAAAAAGCTTCCAATAATGACCTCAATACCCTTCCTCGTACCTATTTCTAGATCACCCAAACAACCTAGAATACCTGGACAGTCAAATAGATTCCTTGAAATACATGGTGGCACTGCCGCTTACGGTTCCACTGGAATTTCGCTGGAAAACATCAACGTTGGTGAGTTTGCACTATACATATTACTTGTTGTGGTCACTAGTCACTGGTCACTGGTTTCATCTTTATGGGTAGTTCCTCATAAAACTAGACTTGGAACCATCCACATCACTACTTTGGCCAAGCTCTCAACCAAGAGACTGGAGACTCTTTCATTAGTTAGGAATGTTATAGACCAGCCAACTCAGTATATTTCCATGAGGCCTCCATCAGAAATGGGCTACGCCCATGGGCATGGAACACTACCCTCTGCTTGTATCTATCCGCCCATGTCGCCTGCAGTTGGAGGTTGGCCTCAAATGTCAGGAAATGGGGTTTTTCCTTATTATTATCCTCCACAACCAATGTTCCCAACTGCAGATGGATCCCCTGGGCCACCAGTGGTTCCTGCAGAAGTCTGGGCCCACATCAATCCTTCGAGCCACCACCCTGTGCCACCAGTGATTCCTGCAGAAGTCTGGCCCCACGTTAATCCTTCGAACCACCCTGTGCCACCAGGGGTTAATGCACAAGTCTTAGCCCAAGTCAATCCTCCAAACCACCCTGCGCCCCCGATGGTTCCTATTCTGCCCCAAGTCAATCTTGCAAACCAAGGCGAGGCCATTTATCAAAATGGACCAACAATGCCCAATGTCCAGCAAATGCTCACTCTTCAGCAAATGCGCAGGACCGCTCAGGAATTTTCCTTATCCATCAATATCTCAGAGCAACTTGGGGAAGCATCAACTTTCTATGGCGGAAATCCAGTGGACTACAGCTACAACTTGGACAGGTTCGACCAGACTCATCCCCCAAATTAG 1581 0.4649 MSDIPPQWNQNEASEEDFFLESPLMDDDTLDLLSDPDILLSDSDDIPQTGSMSTRQPREDYSFSDIYGDLEEVQPLLDTSLPVHDINNNGSNGLILCGVFEKGESSVRQRVERHDKESGKVTEVAAGWRADKEKATVKEDEDRPKRRRTAEQHSVYERKRRSRIQEKLRTLQEMVPNASKYGFLRLDEQELSLFRPSMEEKKNETTKIKKLPIMTSIPFLVPISRSPKQPRIPGQSNRFLEIHGGTAAYGSTGISLENINVGEFALYILLVVVTSHWSLVSSLWVVPHKTRLGTIHITTLAKLSTKRLETLSLVRNVIDQPTQYISMRPPSEMGYAHGHGTLPSACIYPPMSPAVGGWPQMSGNGVFPYYYPPQPMFPTADGSPGPPVVPAEVWAHINPSSHHPVPPVIPAEVWPHVNPSNHPVPPGVNAQVLAQVNPPNHPAPPMVPILPQVNLANQGEAIYQNGPTMPNVQQMLTLQQMRRTAQEFSLSINISEQLGEASTFYGGNPVDYSYNLDRFDQTHPPN* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0389 526 Pfam Helix-loop-helix DNA-binding domain 152 200 IPR011598 GO:0046983
Vvi1g0389 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 180 IPR036638 GO:0046983
Vvi1g0389 526 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 105 180 IPR031066 -
Vvi1g0389 526 MobiDBLite consensus disorder prediction 44 59 - -
Vvi1g0389 526 MobiDBLite consensus disorder prediction 132 160 - -
Vvi1g0389 526 Gene3D - 137 216 IPR036638 GO:0046983
Vvi1g0389 526 MobiDBLite consensus disorder prediction 31 59 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0389 70 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 33.333 6.41e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g0389 HLH 0.00019 No_clan