Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0384 ATGGGGAACCATCCGAATGTTGAGGTCTTTCTAAGAAACCATGAATCCTTAGCTCCAAAGAGATATCGCTATTCTGATGTTAAAAAGATGACCAATTCATTCAAAGATAAACTGGGTGAAGGAGGATATGGAGGTGTTTACAAAGGAAAGATGCTTGATGGCCAAATGGTGGCAGTAAAGGTCTTGAGTGAAACAAAAGGTAATGGAGAGGAATTTATCAATGAGGTTGCAAGCATTAGTAAAACTTCCCATGTCAATATAGTAACTCTCCTAGGCTTTTGCTATGAGGGTCCAAAAAGAGCCTTGATATATGAGTTCATGGCTAATGGGTCTCTTGAGAAGTTCATATATAATGGAAATCCTTCGACAAATGGTCGATTGGGATGGGAAACCTTGTACAACATTGCCATTGGCATAGCCCGAGGACTAGAGTACTTACATCGTGGTTGTAACACACGAATTGTACATTTTGATATAAAGCCTCACAACATTCTTCTAAATGAAGATTTTTGCCCAAAGGTATCGGACTTCGGCCTAGCTAAACTATGTACCAAAAAAGAGAGTATGATATCCATGTTCGATGCAAGAGGAACTCCTGGATATATTGCTCCTGAAGTATTCTATAGAAGTTTGGGGGGTGTCTCCTACAAATCTGATGTCTATAGCTATGGAGTGATGGTTTTAGAAATGGTCGGAGGAAGAAAGAATATTGACGTTGGTGTTGATCGTATTAGTGAAATATATTTTCCACATTGGATATATAATCACCTTGAACTAGACGAACTTGGATTGCAGGGGCTTATGAGTGAAGAAGACAGGGTGAATGCTAGAAAGATGATAATAGTGAGCTTGTGGTGCATACAAACCAAACCTTCAGATCGTCCACCAATGTGCCGAGTGCTGGATATGTTAGAAGGGAGCCTCCAATCACTGCCAATCCCACCCAAGCCTTTCTTGTTTTCTCCTGCAAGATCAATGAAGGATTCATCGACTACATCAGAATTATGA 1008 0.4018 MGNHPNVEVFLRNHESLAPKRYRYSDVKKMTNSFKDKLGEGGYGGVYKGKMLDGQMVAVKVLSETKGNGEEFINEVASISKTSHVNIVTLLGFCYEGPKRALIYEFMANGSLEKFIYNGNPSTNGRLGWETLYNIAIGIARGLEYLHRGCNTRIVHFDIKPHNILLNEDFCPKVSDFGLAKLCTKKESMISMFDARGTPGYIAPEVFYRSLGGVSYKSDVYSYGVMVLEMVGGRKNIDVGVDRISEIYFPHWIYNHLELDELGLQGLMSEEDRVNARKMIIVSLWCIQTKPSDRPPMCRVLDMLEGSLQSLPIPPKPFLFSPARSMKDSSTTSEL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0384 335 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 325 IPR045874 GO:0004672
Vvi1g0384 335 SUPERFAMILY Protein kinase-like (PK-like) 12 305 IPR011009 -
Vvi1g0384 335 FunFam PR5-like receptor kinase 107 315 - -
Vvi1g0384 335 SMART serkin_6 32 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0384 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vvi1g0384 335 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0384 335 ProSitePatterns Protein kinases ATP-binding region signature. 38 60 IPR017441 GO:0005524
Vvi1g0384 335 Gene3D Phosphorylase Kinase; domain 1 9 106 - -
Vvi1g0384 335 Pfam Protein kinase domain 35 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0384 335 FunFam serine/threonine-protein kinase PBS1-like 5 106 - -
Vvi1g0384 335 Gene3D Transferase(Phosphotransferase) domain 1 107 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0384 Vvi-Chr1 3652537 3653544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0384 3 334 Receptor kinase-like Gene Family AT5G38280 56.637 2.48e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi1g0384 Pkinase 8e-46 CL0016