Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0382 ATGCTGTCAAATTTAAGTACAATTATTTATCAAGTCAAACACATTATCTCTCTTTCCATACATTTTTATAATTTTATTCCAGTCTTCTTTCATTATCTGTATTCAACCTCACCCTCAAGATCCCCAAAAATGATCCACACCAGAATACCCTTATCGCTGCTGATGCACCTCGCCATCTTCATTTTCTTCTTCCTACTGGAAAAATCACTATGCGTGGATCCATACTTCGAGACCTGCAGCCTAAGCAGAACCTGCGGTGGTTTAAATATAAGCTTCCCTTTTTATATTGAAGGCCTGCAAGACCCTATCTGTGGCTACCTTGGGTTCAACGTTTCCTGCCTCCATAACACTACAATTCTCACCATATCCGAGAACCCTTACATCATCCACCAAATTTTCTACCAAAACCAGACTCTTCGAGTCTCAAACGCCTTAGGAAATGGCTGCCTTCCTTTGGGTCGCGACCTACTCCTTCCCAATGAAGAATTTGAGCTCGCTCATCCTGATGGCACCGACTTCTTCTTCTTTCTATCCAATTGTTCAGCTCCATTGCCTGATAATCTAGTACGCTACAAGATTAATTGTTCTGGCGATGATGGAGCAAGTCCGGTTCTGGCAATGTCTAAGGGAGATTCAAACTGGGTTCTGGCGTCCGAGAAGTGCGGAAGAGAGGTAAAAGCGCCTTTTGAAGAGAAGGCAGATGATGGGAGTAATGAAATTGGGGAGGAATTGGTGAGAAGAGGGTTCATGCTGAAATGGAGAGCAAGCGACTGTAGCGTGTGCGAGGAGAGTGGTGGCAAGTGTGGGTTTAATATCAGTGATTACCATTTCAAGTGTTTCTGCCCCGACCGTCCTCACGCTAAGCATTGCGTATCCAGAAATGACAAGACACTGAAGCTAGCCCTAGGATTAGGTATTGTCGGAAGCATTCCCTTCTTAATAATTTGTTTCTTTATCATCCGGCAGCGCCGTAAAGGGAAGTATGCTTCAACTTTCCTCTCAAGGAACACTTCTTCAGATCCCTCTTCACAACCAGGGTTGGAAACAGCGGGGGCGTATTTTGGCATCGCCATATTCCCCTACACTGAACTTGAAGAAGCCACTAATTATTTTGACCCTGACAGAGAAATTGGAGATGGAGGCTTTGGAAGTGTATACCATGGACAACTGCGAGATGGGCGAGAGGTTGCTGTCAAGCGCCTATACGAGAACAATTACAGGCGGGTTGAACAGTTCATGAATGAAGTTCAAATCCTCACTCGTTTACGCCACCGGAATCTTGTCTCCCTTTACGGCTGCACCTCACGCCACAGCCGTGAACTCCTTCTGGTTTACGAATTTATTCCCAATGGCACAGTCGCTGATCATCTCCACGGGGATCGAGCAGATTCAGGCTTACTCACATGGCCTATCCGATTGAGTATTGCCATAGAAACTGCCACCGCATTATGTTATCTCCATGCTTCTGATGTTGTACACCGGGACGTGAAAACTAGCAACATTCTCCTAGACAATAGTTTCTGTGTTAAAGTCGCAGATTTCGGGCTTTCACGACTCTTCCCCACCGATGTTACCCATGTCTCAACCGCTCCACAAGGGACTCCCGGCTATGTTGATCCAGAATATCACCAATGTTACCAGCTTACAGATAAGAGCGATGTTTACAGCTTTGGGGTTGTCCTTATTGAACTCATATCATCACTGCCTGCTGTAGACATTAGTAGGCACAGGCATGAGATCAATTTGTCTAACTACGCTATAAACAAGATACAAAAATGCGCATTTCACGAGCTGATGGACCCGCATCTTGGATTTGATTCAGATCTTGCGGTTAATAGGATGACTACTCTGGTGGCAGAATTGGCCTTTCGCTGTCTGCAACCTGATAAGGAAATGAGGCCTTCCATGGATGAAGTCTTGGAGATTTTGAAGGAAATTGAGAGTGACAAGCATGAATTGGAGAACATGGACACAGCAGCGGACAGTGTTGGATCCTCCATGCGTAAGCCGCCATCACCTTCACCAGATTGTGATGAAGTGGGGTTGTTGAAAAGTGCCCCGCTGATGCCATCACCAGATACTGTGATCGCTCGATGGCCCAGTATGTCTACTACACCAAGCGCCAGTGCTTAA 2133 0.458 MLSNLSTIIYQVKHIISLSIHFYNFIPVFFHYLYSTSPSRSPKMIHTRIPLSLLMHLAIFIFFFLLEKSLCVDPYFETCSLSRTCGGLNISFPFYIEGLQDPICGYLGFNVSCLHNTTILTISENPYIIHQIFYQNQTLRVSNALGNGCLPLGRDLLLPNEEFELAHPDGTDFFFFLSNCSAPLPDNLVRYKINCSGDDGASPVLAMSKGDSNWVLASEKCGREVKAPFEEKADDGSNEIGEELVRRGFMLKWRASDCSVCEESGGKCGFNISDYHFKCFCPDRPHAKHCVSRNDKTLKLALGLGIVGSIPFLIICFFIIRQRRKGKYASTFLSRNTSSDPSSQPGLETAGAYFGIAIFPYTELEEATNYFDPDREIGDGGFGSVYHGQLRDGREVAVKRLYENNYRRVEQFMNEVQILTRLRHRNLVSLYGCTSRHSRELLLVYEFIPNGTVADHLHGDRADSGLLTWPIRLSIAIETATALCYLHASDVVHRDVKTSNILLDNSFCVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVLIELISSLPAVDISRHRHEINLSNYAINKIQKCAFHELMDPHLGFDSDLAVNRMTTLVAELAFRCLQPDKEMRPSMDEVLEILKEIESDKHELENMDTAADSVGSSMRKPPSPSPDCDEVGLLKSAPLMPSPDTVIARWPSMSTTPSASA* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0382 710 Pfam Wall-associated receptor kinase C-terminal 209 283 IPR032872 -
Vvi1g0382 710 ProSiteProfiles Protein kinase domain profile. 371 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0382 710 SMART serkin_6 371 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0382 710 Gene3D Transferase(Phosphotransferase) domain 1 448 660 - -
Vvi1g0382 710 MobiDBLite consensus disorder prediction 659 710 - -
Vvi1g0382 710 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Vvi1g0382 710 Coils Coil 636 656 - -
Vvi1g0382 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 491 503 IPR008271 GO:0004672|GO:0006468
Vvi1g0382 710 FunFam receptor-like protein kinase FERONIA 335 447 - -
Vvi1g0382 710 FunFam Wall-associated receptor kinase-like 20 448 656 - -
Vvi1g0382 710 Pfam Wall-associated receptor kinase galacturonan-binding 79 142 IPR025287 GO:0030247
Vvi1g0382 710 Gene3D Phosphorylase Kinase; domain 1 348 447 - -
Vvi1g0382 710 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 55 703 IPR044652 GO:0004672
Vvi1g0382 710 SUPERFAMILY Protein kinase-like (PK-like) 351 643 IPR011009 -
Vvi1g0382 710 Pfam Protein kinase domain 374 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0382 Vvi-Chr1 3628954 3637959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0382 257 710 Receptor kinase-like Gene Family AT1G25390 57.081 1.35e-169 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vvi1g0382 PK_Tyr_Ser-Thr 1.8e-46 CL0016