LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0381	ATGGAGGGAGAGGAGGATTACCTTGTTTCTGTCTGTATGGTGCCAATGCTTTTGTTGTTGAATTGGGGATTTCGCATGGGTTCTGTTTCTTTTCTTGTTCTATTTCTTCTCTCTCATTCTGTGCTTCTTTCCTCTGCTGAAGAAGAAAGGAAACAGCCTCCAACTTGTCCACCCTTTCACTGTGAAAAACTGGGCTGGCTTCACTTTCCCTTCAACAACGAAACAAACCCAGAATGCGGTTTTTGCACAGTAACAAGATGTACTGAAGGGCTTCCACGGATCCAACTGGAAAGGGAAGGAAGATATTTTGGGGTGAAAAACATCTCTCAGGCTGATACCATAGTAATTCAAGATAAGCGGCTTCAAGAGAACTTGCAACGCGGCATATGTGAATTCATTGATAACTTAACTCGTTTCCGTTCTCCTTCTGTTTCTTTCAAACCAGTACCCCCTCTAGCCGAACTAACCCTGTTCAAATGCCACCGTAATCTCAATATTGATCTTACTACAGATCATAATTATACCGATTGTCAAGACTACATCATCCACTATAATCATCCAAATCATACTTCCATTCCTCCACCTCTACCTCATAATCAACCAAACCATACTCCCACTCTTCCACCTCCAGCTCCACTGGACTGTTCTATTATTCAGTATCCAATAAACATGAGTTTAGGAATGGACAACCTGGTTGCCCTGTTGACTTCTGATATCACTCTTGAAGTGCATCTGTCCCGTGAATGTCGGAAGTGTCACTCTAGTGGAGGCCAATGTCGAGATGACGAGGGAAAATTCCGGTGTGCACATACAGGGAATGACAAGCGACTGAAGCTAGCCCTAGGATTAGGTATCAGTGCCGGAAGCATTACCATCTTAATAATTTGTTTCTTTATCATCTGGCAGAGCCATAAGAGGAAGTACGCTCCAACTTTCCTCTCAAGAAACACTTGTTCAGATCCCTCTTCAAAATCAGAGTTGGAAATAACGGGGGCGTATTTTGGCATCCCCATTTTTCCCTACACTGAACTTGAAGAAGCCACTAATTATTTTGACCCTGATAGAGAAATTGGAGATGGAGGTTTTGGAACTGTATACCATGGACAACTGCGAGATGGGCGAGAGGTTGCTGTCAAGCGCCTATACGAGAACAATCACAGGCGGGTTGAACAGTTCATGAATGAAGTTCAAATCCTCACTCGTTTGCGCCACCGGAATCTTGTCTCCCTTTACGGCTGCACCTCACGCCACAGCCGTGAACTCCTTCTGGTTTACGAATTTATTCCCAATGGCACAGTCGCTGATCATCTCCACGGGGATCGAGCAGATTCAGGCTTACTCACATGGCCTATCCGATTGAGTATTGCCATAGAAACTGCCACTGCATTATGTTATCTCCATGCTTCTGATGTTGTACACCGGGACGTGAAAACTAAGAACATTCTCCTGGACGATAGTTTCTGTGTTAAAGTCGCAGATTTCGGGCTTTCACGACTCTTCCCGACCGATGTTACCCATGTCTCAACCGCTCCACAAGGGACTCCCGGCTATGTTGATCCAGAATATCACCAATGTTACCAGCTTACAGATAAGAGCGATGTTTACAGCTTTGGGGTTGTCCTTATTGAGCTCATATCATCACTGCCTGCTGTAGACATTAATAGGCATAGGCATGAGATCAATTTGTCTAACTACGCTATAAACAAGATACAAAAATGCGCATTTCACGAGCTGATAGACCCACGTCTTGGATTTGATTCAGATCTTGCGGTTAATAGGATGACTACTCTGGTGGCAGAATTGGCCTTTCGCTGTCTGCAACCTGATAAGGAAATGAGGCCTTCCATGGATGAAGTCTTGGAGATTTTGAAGGAAATTGAGAGTGACAAGCATGAATCGGAGAACATGGACATAGCAACCGACAGTGTTGGATCGTCGATGCATGAGCCACCGCTTCCACCTTCACCAGATTGTGATGAAGTGGGGTTGTTGAAAAGTGTCCAGCTGATGCCATCACTAGATACTGTGACCGCTCAATGGCCCAGTAGGTCTACTACACCAAGCGCCAGTGCTTAA	2076	0.4494	MEGEEDYLVSVCMVPMLLLLNWGFRMGSVSFLVLFLLSHSVLLSSAEEERKQPPTCPPFHCEKLGWLHFPFNNETNPECGFCTVTRCTEGLPRIQLEREGRYFGVKNISQADTIVIQDKRLQENLQRGICEFIDNLTRFRSPSVSFKPVPPLAELTLFKCHRNLNIDLTTDHNYTDCQDYIIHYNHPNHTSIPPPLPHNQPNHTPTLPPPAPLDCSIIQYPINMSLGMDNLVALLTSDITLEVHLSRECRKCHSSGGQCRDDEGKFRCAHTGNDKRLKLALGLGISAGSITILIICFFIIWQSHKRKYAPTFLSRNTCSDPSSKSELEITGAYFGIPIFPYTELEEATNYFDPDREIGDGGFGTVYHGQLRDGREVAVKRLYENNHRRVEQFMNEVQILTRLRHRNLVSLYGCTSRHSRELLLVYEFIPNGTVADHLHGDRADSGLLTWPIRLSIAIETATALCYLHASDVVHRDVKTKNILLDDSFCVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVLIELISSLPAVDINRHRHEINLSNYAINKIQKCAFHELIDPRLGFDSDLAVNRMTTLVAELAFRCLQPDKEMRPSMDEVLEILKEIESDKHESENMDIATDSVGSSMHEPPLPPSPDCDEVGLLKSVQLMPSLDTVTAQWPSRSTTPSASA*	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0381	691	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	30	684	IPR044652	GO:0004672
	Vvi1g0381	691	SUPERFAMILY	Protein kinase-like (PK-like)	326	623	IPR011009	-
	Vvi1g0381	691	Gene3D	Phosphorylase Kinase; domain 1	323	427	-	-
	Vvi1g0381	691	MobiDBLite	consensus disorder prediction	641	660	-	-
	Vvi1g0381	691	Coils	Coil	616	636	-	-
	Vvi1g0381	691	SMART	serkin_6	351	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0381	691	Pfam	Protein tyrosine and serine/threonine kinase	354	622	IPR001245	GO:0004672\|GO:0006468
	Vvi1g0381	691	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468
	Vvi1g0381	691	FunFam	receptor-like protein kinase FERONIA	315	427	-	-
	Vvi1g0381	691	ProSiteProfiles	Protein kinase domain profile.	351	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0381	691	FunFam	Wall-associated receptor kinase-like 20	428	636	-	-
	Vvi1g0381	691	Gene3D	Transferase(Phosphotransferase) domain 1	428	640	-	-
	Vvi1g0381	691	ProSitePatterns	Protein kinases ATP-binding region signature.	357	379	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0381	Vvi-Chr1	3606617	3609494	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0381	45	691	Receptor kinase-like Gene Family	AT1G25390	48.323	0.0	573

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Vvi1g0381		PK_Tyr_Ser-Thr	1.1e-47	CL0016