LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0380	ATGGAAACTTCTACTTGGACCCTTCTCCTCCACAGTCCTCCCAAGAAATTTCGACAGATACAGAAGAGAAAACATGGCTTAAAGGGAGAGGAAGATTACCCTGTTGCCGTCGGGAATGACAATCGATTGAAGCTAGCCCTAGGATCAGGTATCAGCGCCGGAGGCATTACCATCTTAATAATTTGTTTCATCATCCGACAGCGCCATAAAAGGAAGTATGCTTCAACTTTCCTCTCAAGGAACACTTCTTCAGATCCCTCTTCACAACCAGGATTGGAAACAACGGGGACGTATTTTGGCATCCCCATTTTCCCCTACAGTGAACTTGAAGAAGCCACTTATCATTTTGTCCCTGATAGAGAAATTGGAGATGGAGGTTTTGGAACTGTATACCATGGACAACTGCGAGATGGGCGAGAGGTTGCCGTCAAGCGCCTATACGAGAACAATTACAGGCGGGTTGAACAGTTCATGAATGAAGTTCAAATCCTCACTCGTTTGCGCCACCGGAATCTTGTCTCCCTTTACGGCTGCACCTCACGCCACAGCCGTGAACTCCTTCTGGTTTACGAATTTATTCCCAATGGAACAGTCGCTGATCATCTCCACGGGAATCGAGCAGATTCAGGCTTACTCACATGGCCTATCCGATTGAGTATTGCCATAGAAACTGCCAGCGCATTATGTTATCTCCATGCTTCTGATGTTGTACACCGGGACGTGAAAACTAAGAACATTCTCCTGGATAATAGTTTCTGCGTTAAAGTCGCAGATTTCGGGCTTTCACGACTCTTCCCCACTGATGTTACCCATGTCTCAACCGCTCCACAGGGAACTCCCGGCTATGTTGATCCAGAATATCACCTATGTCACCAGCTTACCGACAAGAGCGATGTTTACAGCTTCGGGGTTGTCCTTATTGAACTCATATCATCACTGCCTGCTGTAGACTTTAGTAGGCTTAAGCATGAGATCAATTTGTCTAACTACGCTATAAACAAGATACAAAAATGTGCATTTCACGAGCTGATTGACCCACATCTTGGATTCAATTCAGATCTTGCGGTTAATAGGATGACTACTCTGGTAGCAGAATTAGCCTTTCGCTGTCTGCAACCTGACAAGGAAATGAGGCCTTCCATGGATGAAGTTTTGGAGATTTTGAAGGAAATTGAGAGTAACAGGCATGAATTGGAGAACATGGACGCAGCAGCGGACAGTGTTGGATCATCGATGCGTGAGCCGCCGCCACCTTCACCAGATTGTGATGAAGTGGGGTTGTTGAAAAGCGTCCAGCTGATGCCATCACCAGATAGTACGACCGCTCAATGGGCCAGTAGGTCTACTACACCAAGCGCCAGTGCTTAG	1368	0.4664	METSTWTLLLHSPPKKFRQIQKRKHGLKGEEDYPVAVGNDNRLKLALGSGISAGGITILIICFIIRQRHKRKYASTFLSRNTSSDPSSQPGLETTGTYFGIPIFPYSELEEATYHFVPDREIGDGGFGTVYHGQLRDGREVAVKRLYENNYRRVEQFMNEVQILTRLRHRNLVSLYGCTSRHSRELLLVYEFIPNGTVADHLHGNRADSGLLTWPIRLSIAIETASALCYLHASDVVHRDVKTKNILLDNSFCVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYHLCHQLTDKSDVYSFGVVLIELISSLPAVDFSRLKHEINLSNYAINKIQKCAFHELIDPHLGFNSDLAVNRMTTLVAELAFRCLQPDKEMRPSMDEVLEILKEIESNRHELENMDAAADSVGSSMREPPPPSPDCDEVGLLKSVQLMPSPDSTTAQWASRSTTPSASA*	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0380	455	ProSiteProfiles	Protein kinase domain profile.	116	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0380	455	MobiDBLite	consensus disorder prediction	433	455	-	-
	Vvi1g0380	455	Coils	Coil	381	401	-	-
	Vvi1g0380	455	FunFam	Wall-associated receptor kinase-like 20	193	401	-	-
	Vvi1g0380	455	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	42	448	IPR044652	GO:0004672
	Vvi1g0380	455	SMART	serkin_6	116	387	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi1g0380	455	Gene3D	Transferase(Phosphotransferase) domain 1	193	405	-	-
	Vvi1g0380	455	Pfam	Protein tyrosine and serine/threonine kinase	119	387	IPR001245	GO:0004672\|GO:0006468
	Vvi1g0380	455	SUPERFAMILY	Protein kinase-like (PK-like)	92	388	IPR011009	-
	Vvi1g0380	455	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	236	248	IPR008271	GO:0004672\|GO:0006468
	Vvi1g0380	455	MobiDBLite	consensus disorder prediction	405	455	-	-
	Vvi1g0380	455	ProSitePatterns	Protein kinases ATP-binding region signature.	122	144	IPR017441	GO:0005524
	Vvi1g0380	455	Gene3D	Phosphorylase Kinase; domain 1	93	192	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0380	Vvi-Chr1	3595488	3600142	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0380	4	455	Receptor kinase-like Gene Family	AT1G25390	57.952	7.54e-177	508

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Vvi1g0380		PK_Tyr_Ser-Thr	1.3e-47	CL0016