Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0377 ATGACCGGACCCCATCAATCTTCTGGCGCTCACAGCATCAGGGATACCATCTGTTACGCCGCTTCGGGTGCTGCTGCAGGTGCAATTGCTGCCACTTTTGTCTGCCCATTGGATGTGATCAAAACAAGATTACAGGTCCATGGCCTACCTGAAGTTCGGCATTCTGGCGTCCGAGGTAGCGTCATTATTACAAGCCTAGAAAACATAATAAGGACAGAGGGTTTGAAGGGAATGTATCGTGGCCTTTCGCCAACAATATTGGCACTACTTCCTAATTGGGCCGTGTACTTCACAGTGTATCAGAAATTAAAAGACGTACTGCATTCCCATGTGGATAGCAGCAGTCAACTTACAATTGGTGCAAATGTGATAGCTGCTTCAGGAGCTGGGGCTGCCACAGCAATTACAACGAATCCATTGTGGGTTGTTAAGACCAGACTCCAAACACAGACAATGAGGCCAAATGTGGTTCCTTACAAAGGCATATTTTCTGCTTTGAAAAGGATTGCACAAGAGGAAGGCATTCGAGGATTGTATAGTGGCCTTTTGCCTTCATTGGCTGGAATAACTCATGTTGCCATCCAATTTCCAGCATACGAGCAGATGAAGTCCTATTTAGCTAAAATGGGTGATACCACAGTTGATGAACTAGGTCCTGGGAATTTTGCAATTGCCTCATCCTTCTCTAAAGTACTTGCCTCCGTGATGACTTATCCCCATGAGGTTATTCGTTCAAGGCTGCAAGAGCAAGGGCAGGTCCGGAATTCAGAGAAGCACTATTCAGGTGTTATTGATTGCATTGAGAAAGTGTACAGAAAGGAAGGTCTTCCTGGTTTCTATCGTGGCTGTGCAACTAATCTATTGCGGACAACTCCATCTGCTGTTATAACTTTCACCAGTTTTGAGATGATTCATAGGTTTTTACAGCGACTTCTACATCCGGATGCAAAGCATTCATCAGCCAACCCTAATTCTGATGGCCATATTAAACCTCAGCGTGAAAATGGGAGAACCGTAGTAGAACAAAATGACTCCAGTGTAAGGCAGTCACAAGCTCAATCTACTAGTAACAGAACTCCAATTCCTATTGGAAACAAGGAGCAGCTACCTGCAAGCCACTGA 1122 0.4501 MTGPHQSSGAHSIRDTICYAASGAAAGAIAATFVCPLDVIKTRLQVHGLPEVRHSGVRGSVIITSLENIIRTEGLKGMYRGLSPTILALLPNWAVYFTVYQKLKDVLHSHVDSSSQLTIGANVIAASGAGAATAITTNPLWVVKTRLQTQTMRPNVVPYKGIFSALKRIAQEEGIRGLYSGLLPSLAGITHVAIQFPAYEQMKSYLAKMGDTTVDELGPGNFAIASSFSKVLASVMTYPHEVIRSRLQEQGQVRNSEKHYSGVIDCIEKVYRKEGLPGFYRGCATNLLRTTPSAVITFTSFEMIHRFLQRLLHPDAKHSSANPNSDGHIKPQRENGRTVVEQNDSSVRQSQAQSTSNRTPIPIGNKEQLPASH* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0377 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 217 307 IPR018108 -
Vvi1g0377 373 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 15 312 IPR044712 GO:0006862|GO:0055085
Vvi1g0377 373 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 15 308 - -
Vvi1g0377 373 PRINTS Mitochondrial carrier protein signature 226 248 IPR002067 GO:0055085
Vvi1g0377 373 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Vvi1g0377 373 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Vvi1g0377 373 PRINTS Mitochondrial carrier protein signature 132 150 IPR002067 GO:0055085
Vvi1g0377 373 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Vvi1g0377 373 PRINTS Mitochondrial carrier protein signature 179 197 IPR002067 GO:0055085
Vvi1g0377 373 MobiDBLite consensus disorder prediction 316 373 - -
Vvi1g0377 373 MobiDBLite consensus disorder prediction 338 363 - -
Vvi1g0377 373 SUPERFAMILY Mitochondrial carrier 15 303 IPR023395 -
Vvi1g0377 373 Pfam Mitochondrial carrier protein 20 109 IPR018108 -
Vvi1g0377 373 Pfam Mitochondrial carrier protein 221 309 IPR018108 -
Vvi1g0377 373 Pfam Mitochondrial carrier protein 116 208 IPR018108 -
Vvi1g0377 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 205 IPR018108 -
Vvi1g0377 373 Gene3D Mitochondrial carrier domain 14 308 IPR023395 -
Vvi1g0377 373 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0377 Vvi-Chr1 3578388 3585271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0377 11 366 Chloroplast and Mitochondria Gene Families AT1G25380 65.000 1.03e-155 441