Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0376 ATGGCGTCGGGAGAAGGGAGACGACATCGGAATCTTGTGCCTCTTGCTGCATTGATCAACAGAGAGATGAGGAGTGAAAAGATGGAGAAGCCGACTGTGAGATACGGGTGTGCTGCTCAGTCTAGGAAAGGAGAGGATTACTTCCTGATGAAGACAGATTGCCAGAGAATCCCTGGGAATTCTTCTTCAACCTTTTCTGTATTTGCGATCTTAGATGGACACAATGGGAATGCCGCAGCCATTTTTACGAGGGAAAATTTGTTGAATCATGTATTGGGTGCTATGCCTCGTGGGCTTGGACGGGAGGAGTGGCTTCAAGCTTTGCCTCGGGCTTTAGTTGCTGGGTTTGTAAAGACGGACAAAGAATTCCAGAGCAGAGGAGAAACTTCTGGAACCACTGCTACATTTGTAATAGTTGATGGATGGACTGTGACAGTTGCATCTGTTGGCGACTCTCGATGCATATTAGATACTCAGGGTGGTGCTGTCTCTACCTTAACTGTCGATCATAGGCTTGAAGAAAATGTGGAGGAGAGGGAACGTGTGACAGCAAGTGGAGGTGAAGTAGGAAGACTTAGCATTGTTGGTGGTGCTGAAATTGGTCCGCTCCGTTGTTGGCCAGGGGGTTTATGTCTTTCTAGGTCAATAGGAGATATGGATGTTGGAGAGTTCATAGTTCCAATACCATATGTTAAACAAGTAAAGCTATCAAATGTAGGTGGGAGACTTATAATTGCTTCTGATGGCATTTGGGATGCTCTGTGCTCAGAAATGGCTGCAAAATCTTGCCGTGGGTTGCCTGCTGAACTTGCTGCTAGGCAAGTTGTGAAGGAAGCATTGAGGACAAGGGGCCTAAAGGATGACACTACCTGCATAGTTGTAGACATAATTCCTCCTGATAATTCAATACAGCCTTCAACTCCTCCAAAAAAGCAAAACAAGCTCAGAGCTCTATTATTCAGGAAGAGGTCACGTGATTCTGTGAATAAACTATCAAAGAAGCTATCAGCTATAGGTATAGTGGAAGAACTGTTTGAAGAAGGCTCAGCAATGCTTGCTGAGAGACTGGGAAGTGAGGAGTGCCCAGGGCAGCCTACATCTGGTCTTTTCATGTGTGCTGTTTGCCAAGTTGATCTTGCTCCAAGCGAGGGCATTTCTGTTCATGCTGGTTCCATCTTCTCCACCAGCTCAAAGCCCTGGCAGGGGCCATTTCTTTGTGCTGATTGCCGTAATAAGAAGGATGCCATGGAAGGAAAACGTCCCAGTGGAATTAAAGTTGTATAA 1284 0.4603 MASGEGRRHRNLVPLAALINREMRSEKMEKPTVRYGCAAQSRKGEDYFLMKTDCQRIPGNSSSTFSVFAILDGHNGNAAAIFTRENLLNHVLGAMPRGLGREEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDGWTVTVASVGDSRCILDTQGGAVSTLTVDHRLEENVEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSNVGGRLIIASDGIWDALCSEMAAKSCRGLPAELAARQVVKEALRTRGLKDDTTCIVVDIIPPDNSIQPSTPPKKQNKLRALLFRKRSRDSVNKLSKKLSAIGIVEELFEEGSAMLAERLGSEECPGQPTSGLFMCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCADCRNKKDAMEGKRPSGIKVV* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0376 427 PANTHER PROTEIN PHOSPHATASE 35 295 IPR015655 GO:0004722|GO:0006470
Vvi1g0376 427 SUPERFAMILY PP2C-like 25 296 IPR036457 -
Vvi1g0376 427 SMART PP2C_4 24 294 IPR001932 -
Vvi1g0376 427 FunFam probable protein phosphatase 2C 5 34 301 - -
Vvi1g0376 427 ProSiteProfiles PPM-type phosphatase domain profile. 27 296 IPR001932 -
Vvi1g0376 427 SMART PP2C_SIG_2 50 296 IPR001932 -
Vvi1g0376 427 Gene3D - 32 301 IPR036457 -
Vvi1g0376 427 CDD PP2Cc 35 296 IPR001932 -
Vvi1g0376 427 Pfam Protein phosphatase 2C 60 281 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0376 Vvi-Chr1 3565291 3568601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0376 1 427 PP2C-type Phosphatase Gene Family AT1G68410 78.947 0.0 700