Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0375 ATGACAAGCTCATTCAAAGATAGAGTAGGAGAAGGAGGATATGGTGCAGTGTACAAAGGAAAGCTCCTCAACGGTGATCTAGTGGCTGTGAAGGTCTTGAGTGAAACAAAAGGCAATGGAGAAGAATTTATCAATGAGATTGCAAGCATTAGTAGGACTTCCCATGTCAACATCGTGAGTCTCCTAGGCTTCTGCTTTCAAGGTTCAAAAAGAGCTCTAATTTATGAGTTCATGCCTAATGGGTCTCTAGAGAAGTTCATATATGACAAAAATTCTTCAATGACATATGACAAATTAGGGTGGGAAACATTGTACAATATTGCCATTGGCATAGCTCGAGGCCTAGAGTACTTACACCGAGGTTGTAACACACGAATTTTACATTTGGACATAAAGCCTCATAACATTCTTTTAAATCAGGATTTTTGCCCAAAAATCTCTGATTTTGGTCTTTCAAAGCTATGTACTCGAAAAGAGAGCATCGTTTCCATGTCAGGTGCAAGAGGAACTGCCGGATATATTGCTCCTGAGGTATTCTGTAGGAATTTCGGAGATGTCTCCCCCAAGTCCGATGTTTACAGCTATGGAATGATGGTTTTAGAAATGGTTGGTGGAAGAAAGAATATTGATGATGGAATTAACCATACCAGTGAAATATATTTTCCTCATTGGATATACAAGCGCCTTGAATTAGATGAAGAACTTGGATTGCAGGGGTTTATGAATGAGGAGGAAAGAACGAGTGCAAGGAAGATGATAATAGTGAGCTTGTGGTGCATACAAACCAACCCCTCAAATCGGCCACCAATGAATGGAGTGGTAGATATGTTGGAAGGAAGCCTTGAATCATTGCAAATCCCACCAAAGCCTTTCTTGTATTCTCCTCCAAGATCAATGAGGGATTTATCGATTGCCTCTGTATCATGA 927 0.4024 MTSSFKDRVGEGGYGAVYKGKLLNGDLVAVKVLSETKGNGEEFINEIASISRTSHVNIVSLLGFCFQGSKRALIYEFMPNGSLEKFIYDKNSSMTYDKLGWETLYNIAIGIARGLEYLHRGCNTRILHLDIKPHNILLNQDFCPKISDFGLSKLCTRKESIVSMSGARGTAGYIAPEVFCRNFGDVSPKSDVYSYGMMVLEMVGGRKNIDDGINHTSEIYFPHWIYKRLELDEELGLQGFMNEEERTSARKMIIVSLWCIQTNPSNRPPMNGVVDMLEGSLESLQIPPKPFLYSPPRSMRDLSIASVS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0375 308 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Vvi1g0375 308 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 294 IPR045874 GO:0004672
Vvi1g0375 308 PIRSF ILK 3 286 - -
Vvi1g0375 308 ProSiteProfiles Protein kinase domain profile. 3 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0375 308 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vvi1g0375 308 SUPERFAMILY Protein kinase-like (PK-like) 5 278 IPR011009 -
Vvi1g0375 308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vvi1g0375 308 SMART serkin_6 3 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0375 308 Pfam Protein kinase domain 6 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0375 308 Gene3D Transferase(Phosphotransferase) domain 1 79 286 - -
Vvi1g0375 308 FunFam PR5-like receptor kinase 78 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0375 Vvi-Chr1 3557361 3558287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0375 1 292 Receptor kinase-like Gene Family AT4G18250 60.333 1.25e-124 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi1g0375 Pkinase 1.4e-45 CL0016