Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0372 ATGGCGAAACCCACTCTCACCAGCTTGCATTTTGCTTTTGCTCTCTTCATCCTCCATTTCTTTCTACTCCACGCTTCTACGAGTTCTGATTTGGAAGCTTTGATGGCGTTCAAAGAAACTGCCGATGCTGCTAACAAGCTCACTACCTGGAACGTAACGGTTAATCCGTGCAGCTGGTACGGCGTTTCCTGTCTCCAGAACAGAGTGTCTCGCCTCGTGCTCGAGGGTCTCGACCTGCAAGGCAGTTTCCAGCCCCTTGCATCTCTCACTCAACTTCGAGTTCTGAGTCTCAAGCGAAACCGCCTCTCTGGCCCTATTCCGAATCTCTCCAACCTCACTGCTCTGAAGCTGCTTTTTCTTTCTTACAATGAGTTCTCGGGGGAGTTTCCCGCTTCCGTCACGTCTCTTTTCCGGCTGTACCGTCTCGATTTGTCTCACAACAACTTATCGGGCCAGATTCCGGAGACAGTCAACCACTTGGCACATATTCTTACTCTGCGTCTGGAAGAAAACCGGTTTTCCGGCAGCATTACAGGTTTGAATCTCCCGAATCTGCAGGACTTCAACGTCTCCGGAAACCGCCTCGCCGGTGATATACCGAAAACTCTTTCCGCGTTCCCTGTGTCCGCCTTTGACCGAAATGCGGTTCTCTGTGGATCTCCCATGCCAACATGCAAGAACGTCGCGGGCGACCCAACGAAACCTGGATCCGGTGGCGCAATCGCATCGCCGGTGATTCCTGGCGGAAATCCAGCAATAGTTGCCTCCTCGCCGAGCTCAATACCGATATCCACAACGCCAATCCAGCCACAAAATACTCGCCACGGTGCCACAGGAAAAGTAAGTCCAGTGGCCATGATCGCCATCATACTCGGCGACATTTTGGTCCTCGCAATAGTCTCTCTCCTTCTCTACTGCTACTTCTGGCGAAATTACGCTGGAAAAATGAGAGACGGCAAGAGCTCGCAAATCCTCGAGGGGGAAAAAATTGTGTACTCATCCAGCCCATATCCAGCCCAAGCTGGGTACGAGAGGGGTCGAATGGTGTTCTTCGAAGGCGTGAAGCGGTTCGAGCTGGAAGACTTGCTTCGAGCCTCCGCTGAGATGCTGGGCAAAGGAGGCTTCGGAACTGCCTACAAAGCCGTTCTCGACGACGGCAATGTCGTCGCCGTTAAACGACTCAAGGACGCTCACGTTGGAGGGAAACGTGAGTTCGAGCAGCATATGGAGGTGCTGGGACGGTTACGGCACCCTAACGTCGTTAATTTGAGGGCCTATTATTTTGCCAGAGACGAGAAGTTGCTGGTCTATGATTACATGCCTAATGGCAGTCTATTTTGGCTTCTTCACGGGAACCGTGGACCCGGAAGAACGCCTCTGGACTGGACCACGAGGTTGAAGATTGCAGCCGGAGCGGCGCGAGGACTGGCCTTTATTCACAACTCATGCAAGACGCTTAAACTCACCCACGGTAACATCAAGTCCACAAACATCCTCCTTGATAAATGTGGTAGCGCACGAGTTTCCGACTTTGGTCTCTCCGTCTTTGCCTCTTCAACGGCTGCACCCAGATCAAATGGCTACCGTGCCCCTGAAATATTGGACGGCCGAAAGGGCTCCCAGAAGTCTGATGTGTATTCTTTTGGGGTGCTTCTGCTGGAGCTGCTCACAGGAAAGTGCCCTTCCGTGATGGAGAACGGTGGGCCTGGGTCTGGGTACGGAGGAGTGGTGGATCTTCCACGGTGGGTGCAGTCGGTGGTGAGAGAGGAATGGACAGCGGAGGTGTTTGATTTGGAGCTGATGAGGTACAAGGATATCGAGGAGGAGATGGTTGGACTGTTGCAGATTGCAATGGCGTGCACTACCCCTTCACCAGATCAACGACCCAAGATGAGCTACGTGGTGAAAATGATCGAGGAGATACGTGGGGTGGAGGTGTCCCCCTCCCATGAAACCTTCGACTCCGTGTCGGACTCACCCTCCGTTTCAGAGGACACATGCGGAGTGAGCCAGTGA 2016 0.5322 MAKPTLTSLHFAFALFILHFFLLHASTSSDLEALMAFKETADAANKLTTWNVTVNPCSWYGVSCLQNRVSRLVLEGLDLQGSFQPLASLTQLRVLSLKRNRLSGPIPNLSNLTALKLLFLSYNEFSGEFPASVTSLFRLYRLDLSHNNLSGQIPETVNHLAHILTLRLEENRFSGSITGLNLPNLQDFNVSGNRLAGDIPKTLSAFPVSAFDRNAVLCGSPMPTCKNVAGDPTKPGSGGAIASPVIPGGNPAIVASSPSSIPISTTPIQPQNTRHGATGKVSPVAMIAIILGDILVLAIVSLLLYCYFWRNYAGKMRDGKSSQILEGEKIVYSSSPYPAQAGYERGRMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAHVGGKREFEQHMEVLGRLRHPNVVNLRAYYFARDEKLLVYDYMPNGSLFWLLHGNRGPGRTPLDWTTRLKIAAGAARGLAFIHNSCKTLKLTHGNIKSTNILLDKCGSARVSDFGLSVFASSTAAPRSNGYRAPEILDGRKGSQKSDVYSFGVLLLELLTGKCPSVMENGGPGSGYGGVVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMACTTPSPDQRPKMSYVVKMIEEIRGVEVSPSHETFDSVSDSPSVSEDTCGVSQ* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0372 671 CDD STKc_IRAK 370 641 - -
Vvi1g0372 671 MobiDBLite consensus disorder prediction 649 671 - -
Vvi1g0372 671 Gene3D Ribonuclease Inhibitor 87 230 IPR032675 -
Vvi1g0372 671 Gene3D Ribonuclease Inhibitor 23 86 IPR032675 -
Vvi1g0372 671 MobiDBLite consensus disorder prediction 650 671 - -
Vvi1g0372 671 Pfam Leucine rich repeat N-terminal domain 29 64 IPR013210 -
Vvi1g0372 671 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Vvi1g0372 671 Gene3D Transferase(Phosphotransferase) domain 1 440 658 - -
Vvi1g0372 671 Gene3D Phosphorylase Kinase; domain 1 341 439 - -
Vvi1g0372 671 Pfam Protein kinase domain 368 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0372 671 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 440 651 - -
Vvi1g0372 671 SUPERFAMILY L domain-like 46 205 - -
Vvi1g0372 671 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 644 IPR046959 -
Vvi1g0372 671 FunFam pollen receptor-like kinase 1 336 439 - -
Vvi1g0372 671 FunFam Nuclear pore complex protein NUP107 27 179 - -
Vvi1g0372 671 ProSiteProfiles Protein kinase domain profile. 364 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0372 671 SUPERFAMILY Protein kinase-like (PK-like) 368 639 IPR011009 -
Vvi1g0372 671 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0372 Vvi-Chr1 3523093 3525603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0372 29 668 Receptor kinase-like Gene Family AT1G68400 67.688 0.0 846
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi1g0372 Pkinase 3.1e-36 CL0016