Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0368 ATGGCGACGCCATTGACAGGGCTTCAACATAGAGATGGAGGTTTGGGTCTGATGGCGGGGCCTGCCAACCAAATGGATTCTTCTCCTTCGAAGAGTTGCTTGAAGAGCTCAGCTCTCAAGTCTCCTATTCTCATCTTCTTGTTCTTCCACAAGGCCATCCGTTCGGAGCTCGATGGCCTGCATCGTGCGGCCATGGATTTTGCTACTAATCAGGACAGTGATATTAATCCTTTGTTGGAACGCTACCACTTTTTTCGCGCAATCTACAAGCACCACTGTAATGCTGAGGACGAGGTCATATTTCCAGCTCTTGATAGACGTGTGAAGAATGTTGCACGGACTTACTCCCTTGAACATGAGGGAGAAAGTGCCCTTTTTGATCAACTATTCGAGCTGTTGAATTCAAAAACTCAAAACGAAGAAAGCTATCGGAGAGAGTTAGCCTTATGCACCGGAGCTCTTCAAACTTCAATTAGTCAGCACATGTCCAAGGAAGAGGAACAAGTGTTCCCCTTGCTGATTGAGAAGTTTTCTTTTGAAGAGCAGGCATCATTGATTTGGCAGTTTCTGTGCAGCATTCCTGTTAATATGATGGCAGAGTTCCTTCCGTGGCTTTCTTCCTCTATTTCATCTGATGAACATCAAGATATGCATAAATGCTTGTGCAAGATAGTCCCAGAAGAGAAGCTTCTTCAACAGGTTATTTTCACCTGGATGGAAAATATTCAGAAAAGTTGTGAAGATAATCCTAATGACAGAGGTCCTGATTCTGGGGCCAGAACCTTAATCAGTCGAACTAAGAACTGGCAATGTGCATGTGAATCTTTGAAAACTGGTAAAAGGAAATATTTGGAGCCCAATAATGTTACAACTGCTTCAACTCTGGCATGTCCAATAGATGAAATATTGCATTGGCATAAAGCAATAAAAAGAGAGTTGAATGATATAGCAGAGGCAGCAAGGAAGATACAACTTTTTGGAGATTTCTCTGATTTATCTGCTTTCAACAAGAGGCTGTTGTTTATTGCAGAAGTTTGTATTTTTCACAGTATTGCTGAAGACAAAGTTATATTCCCTGCCGTAGATGCAGAACTCTCTTTTGCCCAGGAGCATGCAGAAGAAGAAAGCCAATTTGATAAACTTAGGTGCTTGATAGAAAGCATACAAAGTGCCGGAGCCAACTCATCTTCTGCTGAATTTTATACAAAGTTATGCTCACAGGCTGATCAAATAATGGATACGATACAGAAGCACTTTCACAATGAAGAAGTTCAGGTTCTTCCACTTGCTCGAAAGCATTTTAGCCCCAAAAGACAGCGTGAACTTCTGTATCAAAGCCTATGTGTGATGCCCTTAAGATTGATTGAGTGTGTCCTGCCATGGTTGGTTGGATCCCTTGATGAAGAAGCAGCAAGGTCTTTTCTTCAAAATATGCATTTGGCAGCTCCAGCTTCAGATAATGCACTTGTTACACTTTTTTCTGGCTGGGCATGCAAAGGCCGCTCTAGGGATGCATGCTTGTCTTCTGGTGCAGTTGGTTGCTGTCTTGCCAAAATACTGACCACAACCACAGGAGATCCTGATCAGTCTTTTTGTGCATGCACCCCTTTGTTTTCTGCTAAGGAAAATTCTACATCAGATCACTTGGATGATGATGAAAGGCCAGTTAAGCGTGGAAACTGTACTTCATGGGAAGACAGTAATGCTTGTGACCCTAGAAGAACTGTAAACATACAGAAATTAGCTTGTAGTAATCAGTCTTGCTGTGTCCCTGAGTTAGGAGTGAATAACAGTAATCTAGGAACGGGTTCTCTTGCTTCAGCAAAATCTTTGCGCTCCTTATCTTTTATTCCTTGTGCTCCTTCCCTCAACTCCAGTCTTTTTAATTGGGAAACAGATGTAAGCTCTCCTGATATTGGGAGTGCGACGCGACCTATTGATAACATATTCAAATTTCATAAAGCCATCCGCAAAGATTTGGAGTATTTGGATGTTGAATCTGGGAGACTTAATGATTGTAATGATACTTTCCTTAGGCAGTTCAGTGGTAGGTTTCGTTTGTTATGGGGCTTATATAGGGCTCACAGTAATGCTGAGGATGATATTGTCTTCCCAGCATTAGAATCTAGAGAGACTCTTCATAATGTTAGCCACTCTTACACTTTGGACCACAAGCAGGAAGAAAAACTATTTGAAGACATTTCATCTGTGCTCTCTGACCTTACTCTGCTTCATGAGAGTTTGAACAGTGCAAATATGCCTGAAGAGTCAACTAGAATTAATCTAGATTCTTCTCATCATAATGACAGTATCAGAAAGTACAATGAACTTGCTACAAAGCTTCAGGGCATGTGCAAATCCATTAGAGTGACACTGGATCAACATGTTTACAGGGAAGAACTTGAGCTTTGGCCATTGTTTGACAAACATTTTTCTGTGGAGGAACAAGACAAAATTGTTGGCCGTATTATTGGTACTACAGGTGCAGAGGTGCTCCAATCGATGTTGCCATGGGTTACATCTGTTCTTACTGAGGAAGAGCAGAACAAAATGATGGACACATGGAAGCAGGCAACAAAGAACACAATGTTTAGTGAGTGGCTTAATGAATGGTGGGAAGGAACTGCTGCTGCATCTCCACTGGCCTTTACATCAGAAAATAAGATTTCACAAGGCATCAATGTTCATGAAAGCCTGGACCACAGTGATCATACTTTCAAGCCTGGCTGGAAAGATATTTTTCGGATGAATGAAAATGAGCTTGAATCAGAGATAAGAAAAGTTTCTCGGGATTCAACTCTTGATCCAAGGAGAAAAGATTATCTTATTCAAAATCTTATGACAAGTCGCTGGATAGCTGCTCAGCAAAAGTTACCTCAAGCAAGGACAGTTGAAACTTCAAATGGTGAGAATGTGCTTGGATGCATTCCATCATTTCGAGATCCAGATAAGCAAATATTTGGGTGTGAGCATTACAAGAGGAACTGCAAACTCCGTGCTTCATGCTGTGGCAAGTTGTTTGCTTGCAGGTTTTGCCATGATAAAGTCAGCGATCATTCAATGGATAGGAAGGCTACATCTGAAATGATGTGTATGTTCTGCCTAAGAATCCAGCCTATTGGACCAATTTGCACAACACCTTCCTGTGGTGGATTGTTGATGGCAAAATATTATTGCAGCATCTGCAAATTTTTTGATGATGAGAGGACAGTTTATCATTGCCCATTTTGCAACTTGTGCCGTGTTGGGAAGGGACTTGGTGTTGACTTCTTTCATTGCATGACATGCAATTGTTGTCTGGCCATGAAGTTGGCTGACCACAAGTGCCGGGAGAAAGGCTTAGAAACAAACTGCCCCATCTGCTGTGATGACATGTTCTCATCAAGTGCGGTTGTACGAGCTCTTCCTTGTGGCCATTTCATGCATTCAGCTTGCTTCCAGGCATACACTTGCAGTCACTATATTTGTCCAATTTGTAGCAAATCCTTGGGAGATATGGCAGTTTACTTTGGTATGCTTGATGCATTATTAGCTTCTGAGGCGCTTCCTGAAGAATACAGGGATCGCTGTCAGGACGTACTGTGCAATGACTGTGGTAAGAAGGGAACCTCGCCTTTTCACTGGCTGTACCACAAATGCAGGTTTTGTGGATCTTATAATACCAGGGTAATCAAGGTTGACTCGACAAATTTGGACTGCTCAACATCAAACTAG 3714 0.4203 MATPLTGLQHRDGGLGLMAGPANQMDSSPSKSCLKSSALKSPILIFLFFHKAIRSELDGLHRAAMDFATNQDSDINPLLERYHFFRAIYKHHCNAEDEVIFPALDRRVKNVARTYSLEHEGESALFDQLFELLNSKTQNEESYRRELALCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLIWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMHKCLCKIVPEEKLLQQVIFTWMENIQKSCEDNPNDRGPDSGARTLISRTKNWQCACESLKTGKRKYLEPNNVTTASTLACPIDEILHWHKAIKRELNDIAEAARKIQLFGDFSDLSAFNKRLLFIAEVCIFHSIAEDKVIFPAVDAELSFAQEHAEEESQFDKLRCLIESIQSAGANSSSAEFYTKLCSQADQIMDTIQKHFHNEEVQVLPLARKHFSPKRQRELLYQSLCVMPLRLIECVLPWLVGSLDEEAARSFLQNMHLAAPASDNALVTLFSGWACKGRSRDACLSSGAVGCCLAKILTTTTGDPDQSFCACTPLFSAKENSTSDHLDDDERPVKRGNCTSWEDSNACDPRRTVNIQKLACSNQSCCVPELGVNNSNLGTGSLASAKSLRSLSFIPCAPSLNSSLFNWETDVSSPDIGSATRPIDNIFKFHKAIRKDLEYLDVESGRLNDCNDTFLRQFSGRFRLLWGLYRAHSNAEDDIVFPALESRETLHNVSHSYTLDHKQEEKLFEDISSVLSDLTLLHESLNSANMPEESTRINLDSSHHNDSIRKYNELATKLQGMCKSIRVTLDQHVYREELELWPLFDKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSVLTEEEQNKMMDTWKQATKNTMFSEWLNEWWEGTAAASPLAFTSENKISQGINVHESLDHSDHTFKPGWKDIFRMNENELESEIRKVSRDSTLDPRRKDYLIQNLMTSRWIAAQQKLPQARTVETSNGENVLGCIPSFRDPDKQIFGCEHYKRNCKLRASCCGKLFACRFCHDKVSDHSMDRKATSEMMCMFCLRIQPIGPICTTPSCGGLLMAKYYCSICKFFDDERTVYHCPFCNLCRVGKGLGVDFFHCMTCNCCLAMKLADHKCREKGLETNCPICCDDMFSSSAVVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMAVYFGMLDALLASEALPEEYRDRCQDVLCNDCGKKGTSPFHWLYHKCRFCGSYNTRVIKVDSTNLDCSTSN* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0368 1237 Pfam Hemerythrin HHE cation binding domain 645 806 IPR012312 -
Vvi1g0368 1237 Pfam Hemerythrin HHE cation binding domain 47 173 IPR012312 -
Vvi1g0368 1237 Pfam Hemerythrin HHE cation binding domain 298 430 IPR012312 -
Vvi1g0368 1237 ProSiteProfiles Zinc finger CHY-type profile. 982 1051 IPR008913 GO:0008270
Vvi1g0368 1237 Gene3D nmb1532 protein domain like 41 190 - -
Vvi1g0368 1237 Gene3D nmb1532 protein domain like 299 446 - -
Vvi1g0368 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1228 - -
Vvi1g0368 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1054 1117 IPR017921 -
Vvi1g0368 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1113 1162 IPR013083 -
Vvi1g0368 1237 FunFam Zinc finger protein-related isoform 1 1113 1162 - -
Vvi1g0368 1237 CDD RING-H2_Pirh2-like 1117 1160 - -
Vvi1g0368 1237 CDD Hr-like 300 428 - -
Vvi1g0368 1237 CDD Hr-like 649 805 - -
Vvi1g0368 1237 CDD Hr-like 45 171 - -
Vvi1g0368 1237 Gene3D - 1189 1233 - -
Vvi1g0368 1237 SUPERFAMILY Zinc hairpin stack 1055 1110 IPR037275 -
Vvi1g0368 1237 ProSiteProfiles Zinc finger RING-type profile. 1118 1160 IPR001841 -
Vvi1g0368 1237 Pfam Ring finger domain 1117 1159 IPR001841 -
Vvi1g0368 1237 Pfam Zinc-ribbon 1165 1222 IPR039512 -
Vvi1g0368 1237 Gene3D nmb1532 protein domain like 641 871 - -
Vvi1g0368 1237 FunFam Zinc finger protein BRUTUS 640 870 - -
Vvi1g0368 1237 Pfam CHY zinc finger 989 1064 IPR008913 GO:0008270
Vvi1g0368 1237 SUPERFAMILY RING/U-box 1117 1163 - -
Vvi1g0368 1237 SUPERFAMILY CHY zinc finger-like 983 1045 IPR037274 GO:0008270
Vvi1g0368 1237 SMART ring_2 1118 1159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0368 Vvi-Chr1 3451208 3473419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0368 1 1237 C2H2 Transcription Factor Family AT3G18290 65.796 0.0 1649