Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0365 ATGGGTTCGAAGTTGGAAGGGCCTTCGGCACCAGCAGTTCGTCGGGACCCGTATGAGGTGTTGAGCGTATCCAGAGATTCAACAGATCAGGAAATTAAGACTGCTTACAGAAAGCTTGCTCTTAAGTATCATCCTGACAAAAACGCCAGTAATCCTGAAGCATCAGAACTTTTCAAGGAGGTTGCATATTCTTATAACATCTTATCTGACCCAGAGAAAAGAAGACAATATGACAGTGCAGGGTTTGAGGCTCTGGATTCTGATAGCATGGACATGGAAATTGACTTGTCCAACCTTGGAACTGTCAATACAATGTTTGCAGCATTATTCAGCAAGCTGGGTGTCCCTATTAAGACTACAGTTTCTGCAAATGTTCTTGAAGAAGCTTTAAATGGAACTGTCACAGTCAGACCACTTCCAGTTGGAACATCAGTCAGTGGAAAGGTAGACAAACAATGTGCCCACTTCTTTGGCGTAACAATAAATGAGGAACAAGCCCAAGCAGGGATTGTAGTTAGAGTTACTTCATCTTCACAAAGCAAATTTAAGCTACTTTATTTTGAACAAGATGCCAATGGTGGTTATGGCTTAGCTTTACAGGAAGATAGTGAGAAAACTGGCAAGGTGACATCTGCAGGGATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTTTGAATGCGTTAGCGATGGCTAAGGACCCTGAAGCTGCTTTCTTCAAAAGGTTGGAAGGTCTTCAACCTTGTGAGGTCTCAGAACTAAAAGCTGGCACTCACATATTCGCTGTTTATGGGGATAATTTTTTTAAAACTGCTTCTTATACAATTGAGGCACTTTGTGCTAAGTCATATGAGGATACAACTGAGAAGCTTAAGGATATTGAGGCCCAGATTTTAAGGAAGAGAACTGAGCTACGCCAATTTGAGACAGAATACAGAAAGGCATTGGCACGCTTTCAAGAAGTGACCAACAGATACGGCCAGGAAAAGCAGTGTGTAGATGAGCTGCTGAAACAGCGGGACAGTATCCACTGTTCATTCACCGTAACCAAGACAGCTAATAATAGTATTATTAGTGGAAGTGGTAGTAATATGAGTAATGGAAGTAGTAGTAAAATTCCTAATGATGATTTGAAGGTTGAGAGTCCAGGGGAAGATGTAAGCTCGGAAGGAAAGGATAAATCAAGCAAAAAGAAATGGTTCAATCTCAACCTGAAGGGATCTGATAAAAAGTCTGGTTGA 1248 0.4111 MGSKLEGPSAPAVRRDPYEVLSVSRDSTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDSDSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVSANVLEEALNGTVTVRPLPVGTSVSGKVDKQCAHFFGVTINEEQAQAGIVVRVTSSSQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNALAMAKDPEAAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTASYTIEALCAKSYEDTTEKLKDIEAQILRKRTELRQFETEYRKALARFQEVTNRYGQEKQCVDELLKQRDSIHCSFTVTKTANNSIISGSGSNMSNGSSSKIPNDDLKVESPGEDVSSEGKDKSSKKKWFNLNLKGSDKKSG* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0365 415 SMART dnaj_3 15 73 IPR001623 -
Vvi1g0365 415 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 4 413 - -
Vvi1g0365 415 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vvi1g0365 415 PRINTS DnaJ domain signature 73 92 IPR001623 -
Vvi1g0365 415 PRINTS DnaJ domain signature 18 36 IPR001623 -
Vvi1g0365 415 PRINTS DnaJ domain signature 36 51 IPR001623 -
Vvi1g0365 415 Gene3D DnaJ domain 7 98 IPR036869 -
Vvi1g0365 415 Pfam DnaJ domain 16 78 IPR001623 -
Vvi1g0365 415 SUPERFAMILY Chaperone J-domain 15 86 IPR036869 -
Vvi1g0365 415 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vvi1g0365 415 CDD DnaJ 16 70 IPR001623 -
Vvi1g0365 415 Coils Coil 286 327 - -
Vvi1g0365 415 MobiDBLite consensus disorder prediction 360 415 - -
Vvi1g0365 415 FunFam Chaperone protein dnaJ 16 2 98 - -
Vvi1g0365 415 MobiDBLite consensus disorder prediction 360 378 - -
Vvi1g0365 415 MobiDBLite consensus disorder prediction 1 28 - -
Vvi1g0365 415 MobiDBLite consensus disorder prediction 380 415 - -
Vvi1g0365 415 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0365 Vvi-Chr1 3429870 3441168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0365 9 88 C2H2 Transcription Factor Family AT1G74250 41.176 1.62e-12 67.4