Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0364 ATGGCAGAAATCGACTACCAAGCTAAAGCAACCAGTGCTCCCACAAATGGACGCTTAAAGATCTTTGGCTTTAACGTATCAGAGGACGAAGACGTAGAGTCATCCAAAACTCCATCTGGGTCACCAGAATCAGGGGGTTTTCCAGCAACTGGTGACCGGAAATACGAGTGCCAGTACTGTTGCCGTGAATTTGCCAACTCACAAGCATTAGGTGGTCACCAAAACGCTCACAAGAAAGAGAGACAGCAGCTCAAGCGCGCTCAAATGCAAGCCACCCGAAACGCCGCCACTTCCTACATCCGAAACCCCATGATATCTGCGTTCGCGCCGCCCCCCCATCTCCTGGCTCCGGCGGGGCCTGTGGTGGTTCCGGCGGGGGCGGCGCCGCAGTCGGCTTCCTGGGTGTACGTTCCACGTGGGCCGCCGCCGTTCCACGTGTCTCACGGGTGTGTATTCCCTTCATCTAGTGGGAGAGGTGCCGCTACGCTATCGTATGCCGGCGGTGTCGGGGAGTCAACACTAACGACGTCGGCTCCACAGTCTAGAGCTCATGGAAGAGTGGATGCGCCTTCATTGAGCAGGTTCTCTAGAGGCGACGGTGGCCCCACTTTTGATGATGCATTCGGCTTGGATTTGCATCTTAGCCTCGCCCCAGCTGCGCCTTGA 666 0.5676 MAEIDYQAKATSAPTNGRLKIFGFNVSEDEDVESSKTPSGSPESGGFPATGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQMQATRNAATSYIRNPMISAFAPPPHLLAPAGPVVVPAGAAPQSASWVYVPRGPPPFHVSHGCVFPSSSGRGAATLSYAGGVGESTLTTSAPQSRAHGRVDAPSLSRFSRGDGGPTFDDAFGLDLHLSLAPAAP* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0364 221 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Vvi1g0364 221 PANTHER ZINC FINGER PROTEIN 5 8 220 IPR044299 GO:0010090
Vvi1g0364 221 Gene3D Classic Zinc Finger 44 104 - -
Vvi1g0364 221 MobiDBLite consensus disorder prediction 29 49 - -
Vvi1g0364 221 MobiDBLite consensus disorder prediction 172 200 - -
Vvi1g0364 221 SUPERFAMILY beta-beta-alpha zinc fingers 50 82 IPR036236 -
Vvi1g0364 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Vvi1g0364 221 FunFam Zinc finger protein GIS3 43 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0364 Vvi-Chr1 3422695 3423360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0364 1 219 C2H2 Transcription Factor Family AT1G68360 50.588 2.96e-64 197