Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0360 ATGACTCCTGCTGCTACTGCTGGAGGCAGGCATGATGTCCCAGCAACGGGGAAATGGACAGGGTTGCGCCAACTAAAGGCTGTTCTAGGCTTCATGTTCTGGATCGGACCCATGAATCTGGACCCACATTTGTCAATGAATCCCGCTTTGACTCTCAAGTCGTGGATCTCTCGGAACCCCAATGTGCTCGGCAATGAGGTTTTGAACAAGTGGGGCTGTGATCTTCCTTTCTTGTTCAAGGTGCTTTCGGTTGGAAAGGCTTTATCAAGGCAGGCTCACCCAGATAAAGAATTGGCAGAGACTCTGCATGAGTTGCAGCCAAATATTTATATGAATGGTAATCACAAGCCTGAAATGGCCTTGGCACTTACAGAGTTTGAGGCCCTGCATGGGTTTATTGGTCTCAAGGAGCTCAAGGATGTGCTTTGTGGTGTCCCTGAGATTGTAGAATTGATTGGGAAGGCAGATGCGGAGCAAGTCTTACGTGCCAATGAACATGTGGGGGAAGAAAAAGTGAAAGCAGTTTTAGAGTTTATCTTCACTCAATTGATGTCATCAAACAAAGATACAATATCTGAACTGATATTCAAAATAAAACCACGTCTGAATATGGAAAAGGAGGTATTGGTGCTGAGATTGGAGGGTCAATATCCCACCGATGTGGGTGTCATAGCATCACCATTTCTAAACCATGTGAAACTAAACTCTGGTTTTCTAGGGGCAAATGAACCTAATGCATACATCCCTGGTGAATGTACTGAATGCATGGCAACCTTGGACAATGTCGTTCGTGCTGGCCTTACCTCTAAACACCAGGATATCCGAAAACTTTTTTCCATGCTCACATACCAACAGGGGTTTCCTGAAATTCTGGTTGGAGTTTCCATGAACCCATACACCAAACGATACCTCCCACCCTTTGATGAATTTGAAGTTGATTGCTGTATTCTTCCTCAGGCTGCATCAGTGGTCTTTCCATCCGTCCCAGGACCATCACCATTTCTAATCATGGCTGGGAAGGGAACAATTCATGCAGGGTTTGCTGGAGAACATGTGATTGGAGAGGGTTCGGTTCTCTTTGTGCCTGCCAATATGGAGATTAGGATAGCGGCTTCATCCATGGAGTTACAATTGTATAGGGCTGGACGACCTGATACTAAAAACAATTAG 1170 0.4538 MTPAATAGGRHDVPATGKWTGLRQLKAVLGFMFWIGPMNLDPHLSMNPALTLKSWISRNPNVLGNEVLNKWGCDLPFLFKVLSVGKALSRQAHPDKELAETLHELQPNIYMNGNHKPEMALALTEFEALHGFIGLKELKDVLCGVPEIVELIGKADAEQVLRANEHVGEEKVKAVLEFIFTQLMSSNKDTISELIFKIKPRLNMEKEVLVLRLEGQYPTDVGVIASPFLNHVKLNSGFLGANEPNAYIPGECTECMATLDNVVRAGLTSKHQDIRKLFSMLTYQQGFPEILVGVSMNPYTKRYLPPFDEFEVDCCILPQAASVVFPSVPGPSPFLIMAGKGTIHAGFAGEHVIGEGSVLFVPANMEIRIAASSMELQLYRAGRPDTKNN* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0360 389 CDD cupin_PMI_type_I_N 75 283 - -
Vvi1g0360 389 Pfam Phosphomannose isomerase type I, helical insertion domain 158 228 IPR046458 -
Vvi1g0360 389 CDD cupin_RmlC-like 334 375 - -
Vvi1g0360 389 Gene3D Jelly Rolls 290 381 IPR014710 -
Vvi1g0360 389 PIRSF PMI 32 389 IPR016305 GO:0004476|GO:0009298
Vvi1g0360 389 NCBIfam mannose-6-phosphate isomerase, class I 49 371 IPR001250 GO:0004476|GO:0005975|GO:0008270
Vvi1g0360 389 PRINTS Phosphomannose isomerase type I signature 75 96 IPR016305 GO:0004476|GO:0009298
Vvi1g0360 389 PRINTS Phosphomannose isomerase type I signature 245 264 IPR016305 GO:0004476|GO:0009298
Vvi1g0360 389 PRINTS Phosphomannose isomerase type I signature 110 133 IPR016305 GO:0004476|GO:0009298
Vvi1g0360 389 PRINTS Phosphomannose isomerase type I signature 264 283 IPR016305 GO:0004476|GO:0009298
Vvi1g0360 389 FunFam Mannose-6-phosphate isomerase 287 381 - -
Vvi1g0360 389 Gene3D Phosphomannose Isomerase, domain 2 134 289 - -
Vvi1g0360 389 PANTHER MANNOSE-6-PHOSPHATE ISOMERASE 33 382 IPR016305 GO:0004476|GO:0009298
Vvi1g0360 389 Pfam Phosphomannose isomerase type I, catalytic domain 46 132 IPR046457 GO:0004476|GO:0008270
Vvi1g0360 389 Gene3D Jelly Rolls 33 265 IPR014710 -
Vvi1g0360 389 SUPERFAMILY RmlC-like cupins 50 374 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0360 Vvi-Chr1 3396142 3401075 Dispersed/Wgd