Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0359 ATGGTGGTTGAGGACGACAACTCAGAGAAGCCTCTGGACCTGTTTCTCAAGATTGGTTTAGATGAGAGGACTGCAAGGAACACCATCGCCAATAATAAGGTCACCGCAAATTTGACGGCTGTGATTCACGAGGCAGCGCTCACTAATGGATGCAATCGTACAGTTGGAAATCTTCTGTACACAGTTGCTACAAAATTTCCAGCAAATGCCCTTGTGCATCGTCCAACTCTTTTGCAATATATTGTCTCATCAAAGATTAAAACTCCAGCCCAGTTAGAAGCAGCATTTTCATTTTATTCAAGCATTGGTTCAGAGAACTTTGAGTTAAAAGAATTTGAAGAATCATGTGGTGTTGGTATCGATGTTCCTATTGAAGATATTGAACGCACCGTTAATGAGATTTTTGAGGAGAACAAGAATGTGATTTTGGGGCAACGTTACCAAACAAATGTTGGTGATTTATTTGGGCATGTTCGCAAGAGTCACCCTTGGGCTGATCCAAAGATTGTGAAGCAACTTATAGATGTGAAATTATACGGATTGCTTGGTGAGAAGACTGCAGCAGATGATGAAAAGCCTTCAAGAAAGAAGAAAGAAAAACAAGCTAAAAGCGAGTCAATTGCTGTGGATACTCATCCACCACCAACATCTGAAGAAGAGCTTAATCCATTTTTGATATTCCCCCAGCCAGAGGAGAATTTTAAGGTTCACACTGAAATATTTTTTAGTGATCGCCCGGTGTTGAGAGTTTGTAACACAAGGGAAATGCTTGAAAAACATTTAAAAGCCACAGGAGGGAGAGTTTTTACCCGCTTTCCACCAGAGCCAAATGGGTATCTGCATATTGGTCATGCCAAGGCAATGTTTGTTAGCTTTGGCCTGGCAAAAGAGCGGGATGGATGCTGCTACCTGAGGTATGATGACACAAACCCTGAAGCTGAAAAGAAAGAATATATTGATCATATTGACGAAATTGTCCGGTGGATGGGTTGGGAACCTTTCAAGGTTACTTACACCAGTGATTATTTCCAAGATTTGTATGATCTAGCAGTGGAGCTAATACGAAGGAATCATGCCTATGTTGATCATCAGACTCCTGAAGAAATAAAAGAGTACAGGGAAAAGAAGATGAACAGTCCTTGGAGGGATAGACCAATTGCAGAATCGTTGGAACTTTTTGATCAAATGAGACGGGGAATGATTGAAGAAGGGAAAGCGACACTCAGAATGAAGCAAGACATGCAGAGTGATAATTATAATATGTATGATCTCATTGCATATCGTATCAAGTTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCGCTATGTACACTTGAATTTGAAACACGCCGTGCTTCATACTACTGGTTGATAGATGCACTTGGCCTTTACCAACCTTATGTCTGGGAATACTCACGGTTGAATGTCACTAACACAGTGATGTCAAAGCGTAAGTTGAACCGTTTGGTGACAGAAAGGTGGGTTGATGGTTGGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCATAAATGCTTTTGTTCGAGGAATTGGAATCACTAGAAGTGATAGTAGTATGATACGTTTGGACCGCCTTGAGTTTCATATAAGAGAAGAACTAAACAAAACAGCACCTCGCATGATGGTTGTGCTACATCCACTTAAGGTTGTTATTACCAACCTTGAAGTTGGTTCAACGATGGATCTTGATGCAAAGAAATGGCCTGATGCTCAAATAGAAGATTCGTCTTCCTTTTACAAGGTTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGATATGCTTTCCCTATAAAGTGCACAGAAGTTATCCTCAGTGATGATAAAGAAACTGTTGTTGAGGTCTGGGCTGAATTTGATCCTTCAAAGAAGACAAAGCCAAAGGGAGTTCTTCACTGGGTTGCAGAACCTTCTCCTGGGATTGATCCACTTAAGGTTGAAGTGAGGCTGTTTGACAAACTCTTCCTTTCTGAGAATCCTGCTGAACTTGACAATTGGCTTGCTGATCTGAACCCGGAGTCCAAAGTGGTGATACCTGGAGCATATGCTGTGCCTTCACTTCGAACTGCTGCAGTTGGGGACAGATTTCAGTTTGAAAGGCTTGGTTATTTTGTGGTAGATAAGGACTCCACTTCTGAAAAACTTGTCTTCAATCGTACGGTTACACTACGAGATAGCTACAGCAAAGGTGGGAAATAG 2376 0.4133 MVVEDDNSEKPLDLFLKIGLDERTARNTIANNKVTANLTAVIHEAALTNGCNRTVGNLLYTVATKFPANALVHRPTLLQYIVSSKIKTPAQLEAAFSFYSSIGSENFELKEFEESCGVGIDVPIEDIERTVNEIFEENKNVILGQRYQTNVGDLFGHVRKSHPWADPKIVKQLIDVKLYGLLGEKTAADDEKPSRKKKEKQAKSESIAVDTHPPPTSEEELNPFLIFPQPEENFKVHTEIFFSDRPVLRVCNTREMLEKHLKATGGRVFTRFPPEPNGYLHIGHAKAMFVSFGLAKERDGCCYLRYDDTNPEAEKKEYIDHIDEIVRWMGWEPFKVTYTSDYFQDLYDLAVELIRRNHAYVDHQTPEEIKEYREKKMNSPWRDRPIAESLELFDQMRRGMIEEGKATLRMKQDMQSDNYNMYDLIAYRIKFTPHPHSGDKWCIYPSYDYSHCIVDSLENITHSLCTLEFETRRASYYWLIDALGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTERWVDGWDDPRLMTLAGLRRRGVTSTSINAFVRGIGITRSDSSMIRLDRLEFHIREELNKTAPRMMVVLHPLKVVITNLEVGSTMDLDAKKWPDAQIEDSSSFYKVPFSNIVYIEHTDFRMKDSKDYYGLAPGKSVLLRYAFPIKCTEVILSDDKETVVEVWAEFDPSKKTKPKGVLHWVAEPSPGIDPLKVEVRLFDKLFLSENPAELDNWLADLNPESKVVIPGAYAVPSLRTAAVGDRFQFERLGYFVVDKDSTSEKLVFNRTVTLRDSYSKGGK* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0359 791 Gene3D Ribosomal Protein L25; Chain P 579 698 IPR020056 -
Vvi1g0359 791 NCBIfam glutamine--tRNA ligase 268 788 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vvi1g0359 791 MobiDBLite consensus disorder prediction 188 218 - -
Vvi1g0359 791 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 167 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vvi1g0359 791 Gene3D HUPs 240 578 IPR014729 -
Vvi1g0359 791 PRINTS Glutamyl-tRNA synthetase signature 445 455 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi1g0359 791 PRINTS Glutamyl-tRNA synthetase signature 271 283 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi1g0359 791 PRINTS Glutamyl-tRNA synthetase signature 300 313 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Vvi1g0359 791 FunFam Glutamine--tRNA ligase cytoplasmic 7 120 - -
Vvi1g0359 791 Gene3D - 121 190 IPR042559 -
Vvi1g0359 791 FunFam Glutamine--tRNA ligase cytoplasmic 237 578 - -
Vvi1g0359 791 Gene3D Ribosomal Protein L25; Chain P 700 784 IPR020056 -
Vvi1g0359 791 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 170 242 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vvi1g0359 791 CDD GlnRS_core 267 577 - -
Vvi1g0359 791 SUPERFAMILY Ribosomal protein L25-like 575 785 IPR011035 GO:0006412
Vvi1g0359 791 MobiDBLite consensus disorder prediction 188 206 - -
Vvi1g0359 791 Pfam tRNA synthetases class I (E and Q), catalytic domain 268 572 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vvi1g0359 791 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 274 285 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi1g0359 791 PANTHER GLUTAMINE-TRNA LIGASE 17 785 - -
Vvi1g0359 791 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 575 766 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vvi1g0359 791 Gene3D - 6 120 IPR042558 -
Vvi1g0359 791 FunFam Glutamine--tRNA ligase cytoplasmic 122 190 - -
Vvi1g0359 791 FunFam Glutamine--tRNA ligase 579 698 - -
Vvi1g0359 791 FunFam Glutamine--tRNA ligase cytoplasmic 699 784 - -
Vvi1g0359 791 SUPERFAMILY Nucleotidylyl transferase 268 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0359 Vvi-Chr1 3380069 3395733 Dispersed