LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0358	ATGGCCACAGTTGCAAAGAGGATTAACAACTCTAGTGAAGAAATTGAGCTTCGAAGAGGACCATGGACTCTTGAAGAAGACACTCTTCTCATCCATTACATTGCTTGCCATGGTGAAGGCCGTTGGAACCTGTTAGCTAAATGTGCAGGATTGAAGAGGACTGGAAAGAGTTGCAGATTAAGATGGCTGAACTATTTAAAACCAGACATCAAGCGTGGAAACCTTACTCCACAAGAGCAGCTCTTGATCCTTGAACTCCATTCGAAGTGGGGTAACAGGTGGTCAAGAATTGCACAACATCTACCTGGAAGAACTGACAACGAGATCAAGAACTACTGGAGAACAAGGGTGCAAAAACAGGCAAGGCAACTCAAGATCGAGTCTGATAGCAAGAGGTTCATCGATGCGGTTCGGCGTTTCTGGATGCCCAGATTGCTCCAAAAGATGGAGCAAGCCTCTACTTCTTCAACTGCTGCTGATACTGTGACTACCAACACTACTAACACCACTACCGTGAATTCCCAGAGCTCAACTATTCCTGCTCTGCTACCCAACCAGATCACTGTCTCATCATCTCCCCCACAAAGCTCAGTCACTAGCCCAAGTATTTCTACATCAGATTCCATGAAAATTCCACTGCTGCCAGAAATTTCGGAACACCCAACAAGTCCTTCTCAAGCTATTGGCAACACTGTCCACAACAACCCCGTTATAAATGATTGTTCCTATGTGGACAGCAGTGTCTATGACATGGAGCCTTTGGCTCCTTCGTCAGCAATAGGGACTTATGACTTTTCATTGTTCTCTGACTACCAAATGGCAGAAAATGATTGGATAGATCTGTGGAATGTGGATAAATTATGGTAG	867	0.4487	MATVAKRINNSSEEIELRRGPWTLEEDTLLIHYIACHGEGRWNLLAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSRIAQHLPGRTDNEIKNYWRTRVQKQARQLKIESDSKRFIDAVRRFWMPRLLQKMEQASTSSTAADTVTTNTTNTTTVNSQSSTIPALLPNQITVSSSPPQSSVTSPSISTSDSMKIPLLPEISEHPTSPSQAIGNTVHNNPVINDCSYVDSSVYDMEPLAPSSAIGTYDFSLFSDYQMAENDWIDLWNVDKLW*	289

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0358	288	FunFam	Myb transcription factor	19	71	-	-
	Vvi1g0358	288	ProSiteProfiles	Myb-like domain profile.	14	66	IPR001005	-
	Vvi1g0358	288	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	14	190	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Vvi1g0358	288	Pfam	Myb-like DNA-binding domain	19	66	IPR001005	-
	Vvi1g0358	288	Pfam	Myb-like DNA-binding domain	72	115	IPR001005	-
	Vvi1g0358	288	MobiDBLite	consensus disorder prediction	152	207	-	-
	Vvi1g0358	288	ProSiteProfiles	Myb-like domain profile.	67	117	IPR001005	-
	Vvi1g0358	288	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	14	66	IPR017930	-
	Vvi1g0358	288	SUPERFAMILY	Homeodomain-like	17	113	IPR009057	-
	Vvi1g0358	288	CDD	SANT	76	115	IPR001005	-
	Vvi1g0358	288	SMART	sant	71	119	IPR001005	-
	Vvi1g0358	288	SMART	sant	18	68	IPR001005	-
	Vvi1g0358	288	Gene3D	-	20	71	-	-
	Vvi1g0358	288	Gene3D	-	75	117	-	-
	Vvi1g0358	288	FunFam	MYB transcription factor	76	139	-	-
	Vvi1g0358	288	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	67	121	IPR017930	-
	Vvi1g0358	288	CDD	SANT	21	66	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0358	Vvi-Chr1	3375071	3376157	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0358	16	288	MYB Transcription Factor Family	AT1G68320	52.518	7.31e-88	262

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vvi1g0358		Myb_DNA-binding	2.2e-15	CL0123