Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0357 ATGGCAGAGTTTGCAGCAAACTTGCAGAGCCTTAAACCTTCTTCCTTAGAAATGAACTCAAACATGGAACTGATGAACAACCGGAGTGCACCAGAGAATTCCCACATGAATGGTCACGGATTCATGGCTTTCTCCAATGTGGGATTCTCTATACATCACCAACAAGAGTTCCCTGTGAACTTCAGGGATAATACTCAAAGCCCTGTTCATGCTGGAGGTCTAAGTGCTGTCCAAGTTCTTCAGTTCTCATCGCAGCCCGGAGATTTTGGCCAGGAAACAAAGACTGGAAAAGTGAATTTTGTATCATCTCCTCCAGCTTCTGGGTCTGAGTTCCTTGGAGATAATAAGAACTTGGGTGGAAGAAAGAGGAAGAGAAGCAATGAGAGAGAAAACAATAAACCAAGAGAAGTTATCCATGTGAGAGCAAAGAGAGGCCAAGCTACTGATAGTCACAGTTTGGCAGAAAGGGTAAGAAGAGAGAAAATAAACGAGAAACTGAGATGCTTGCAGGACCTGGTTCCAGGATGCTATAAGACTATGGGAATGGCTGTGATGTTGGATGTGATAATCAATTATGTCCAGTCACTGCAGAACCAGATTGAAGTGAGTTGTAGTCAAGAAATTAATCTCATTATGGAAATGCAAACCTATTGA 654 0.4266 MAEFAANLQSLKPSSLEMNSNMELMNNRSAPENSHMNGHGFMAFSNVGFSIHHQQEFPVNFRDNTQSPVHAGGLSAVQVLQFSSQPGDFGQETKTGKVNFVSSPPASGSEFLGDNKNLGGRKRKRSNERENNKPREVIHVRAKRGQATDSHSLAERVRREKINEKLRCLQDLVPGCYKTMGMAVMLDVIINYVQSLQNQIEVSCSQEINLIMEMQTY* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0357 217 MobiDBLite consensus disorder prediction 116 135 - -
Vvi1g0357 217 SMART finulus 152 202 IPR011598 GO:0046983
Vvi1g0357 217 Gene3D - 142 216 IPR036638 GO:0046983
Vvi1g0357 217 MobiDBLite consensus disorder prediction 85 110 - -
Vvi1g0357 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 196 IPR011598 GO:0046983
Vvi1g0357 217 Pfam Helix-loop-helix DNA-binding domain 150 197 IPR011598 GO:0046983
Vvi1g0357 217 MobiDBLite consensus disorder prediction 85 135 - -
Vvi1g0357 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 208 IPR036638 GO:0046983
Vvi1g0357 217 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 62 201 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0357 Vvi-Chr1 3369210 3370248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0357 127 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 84.000 1.60e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi1g0357 HLH 4.1e-05 No_clan